PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.7KG249300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | NAC | ||||||||
Protein Properties | Length: 286aa MW: 31379.2 Da PI: 5.9685 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 161 | 4.7e-50 | 10 | 141 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 lppGfrF P+deelv++yL kkv++++ ++ evd++ ePw+Lp ++k + +ewyfFs rd+kyatg+r+nratk+gyWkatgkd+ Pavir.7KG249300.1.p 10 LPPGFRFYPSDEELVCHYLYKKVTNERAAQ-GTLVEVDLHAREPWELPDAAKLTASEWYFFSFRDRKYATGSRTNRATKTGYWKATGKDR 98 79*************************776.78***************87788899********************************** PP NAM 91 evlsk.....kgelvglkktLvfykgrapkgektdWvmheyrl 128 ev + ++++vg++ktLvfy+grap+g+k+ Wvmhe+rl Pavir.7KG249300.1.p 99 EVRHPgpaaaSRAVVGMRKTLVFYQGRAPNGVKSCWVMHEFRL 141 ****9888877788***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.45E-59 | 8 | 160 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.1 | 10 | 160 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.3E-27 | 11 | 141 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 286 aa Download sequence Send to blast |
MGLREIESTL PPGFRFYPSD EELVCHYLYK KVTNERAAQG TLVEVDLHAR EPWELPDAAK 60 LTASEWYFFS FRDRKYATGS RTNRATKTGY WKATGKDREV RHPGPAAASR AVVGMRKTLV 120 FYQGRAPNGV KSCWVMHEFR LDSPQTPPKE DWVLCRVFQK RKDGEQDSAG SSSQAAAAMP 180 DDHRPVMDAY VDQTAAGSSA GFAPPPQEDA VIGGFDPVLM NAAAMWQYGS VLDYHFPPQE 240 VTSSPMMAGL GSRGVGDGCG GFYYDTGFED MANIGGMGFA QGWMG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 7e-49 | 1 | 166 | 1 | 174 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.8545 | 0.0 | callus| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Predominantly expressed in the root tip and in lateral root initiation sites. Also detected in expanding cotyledon, and in leaf primordia. {ECO:0000269|PubMed:11114891}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.7KG249300.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU966431 | 0.0 | EU966431.1 Zea mays clone 294479 NAC domain-containing protein 21/22 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025824637.1 | 0.0 | protein CUP-SHAPED COTYLEDON 1-like | ||||
Swissprot | Q84TE6 | 2e-62 | NAC22_ARATH; NAC domain-containing protein 21/22 | ||||
TrEMBL | A0A2T7CXR4 | 0.0 | A0A2T7CXR4_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ga01251.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP697 | 38 | 166 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28530.1 | 4e-78 | NAC domain containing protein 74 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.7KG249300.1.p |