PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7KG236900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ARF
Protein Properties Length: 706aa    MW: 75654.4 Da    PI: 7.6282
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7KG236900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.84.3e-23153254199
                          EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                          f k+lt+sd+++ g +++p+ +ae++        +++ +s  +  +d +g +W++++iyr++++r++lt+GW++Fv+ ++L +gD++vF 
  Pavir.7KG236900.1.p 153 FAKTLTQSDANNGGGFSVPRFCAETIfpeldyrAEPPVQS--VYARDVHGVEWTFRHIYRGTPRRHLLTTGWSNFVNKKKLLAGDSIVFL 240
                          89*********************999****9976666675..************************************************ PP

                          E-SSSEE..EEEEE-S CS
                   B3  84 ldgrsefelvvkvfrk 99 
                            + ++++ +v+++r+
  Pavir.7KG236900.1.p 241 --RGENGRVHVGLRRA 254
                          ..4489999***9996 PP
2Auxin_resp112.15.2e-37305388183
           Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                          aa+ a+ +++Fevv++Prast+eF+v+++ v+++++v++++GmRfkmafetedss++++ +Gt++gv+++d  rWp+S+Wr+L+
  Pavir.7KG236900.1.p 305 AARLAAAGQPFEVVHYPRASTPEFCVRAAAVRASMQVPWCPGMRFKMAFETEDSSRISWfMGTISGVHAADAARWPQSPWRLLQ 388
                          678999****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.8E-36144256IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.45E-29145256IPR015300DNA-binding pseudobarrel domain
CDDcd100178.90E-21152253No hitNo description
SMARTSM010195.6E-21153255IPR003340B3 DNA binding domain
PROSITE profilePS5086312.647153255IPR003340B3 DNA binding domain
PfamPF023626.7E-21153254IPR003340B3 DNA binding domain
PfamPF065074.9E-32305388IPR010525Auxin response factor
PROSITE profilePS5174517.188618696IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 706 aa     Download sequence    Send to blast
MSAAACAPTR LGISLAFADR MAPPPPQPPA LEEEDPAGEG CVNAQLWLAC AGSMCTVPPV  60
GAAVYYFPQG HAEQASDAVD VLSAARGVPP FVPCRVVAVR YMAEPHTDEV FARIRLAPLR  120
PGEPVADVGD AAAGEAGDDH QHQHQHQPKP ASFAKTLTQS DANNGGGFSV PRFCAETIFP  180
ELDYRAEPPV QSVYARDVHG VEWTFRHIYR GTPRRHLLTT GWSNFVNKKK LLAGDSIVFL  240
RGENGRVHVG LRRAKRGFGA GGAGCDDGSP SLSGWDPYGA LARGNAGAGA RSPSGKVPPE  300
DVVAAARLAA AGQPFEVVHY PRASTPEFCV RAAAVRASMQ VPWCPGMRFK MAFETEDSSR  360
ISWFMGTISG VHAADAARWP QSPWRLLQVT WDEPELLQNV KRVCPWLVEQ VSSMPNLHLP  420
NFSPPPRKKQ RLPEFPFEGQ PLFDPPFPPA RPLPPLAPHP RPHHDHGGLI PFFPFPDSSA  480
AASIQGARHA QLAPFFSDLH IGNLQQSLLF CGVRPADHHA APAAPRISTD LAIGNPPPRR  540
DAPRSPPAAA DKADDVKPVG IMLFGRAILT EEQMKSSSPT SPGATRKRSP NTPDRSGSGS  600
GVTEGSPAKN NFGLEPGHGQ CKVFVESDAV GRNLDLSALG SFEELCARLS RLFRIDDADL  660
RSHVLYRTAA GEVKHVGDEP FNAFVRSARR ITILGDAGSD STGSQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A2e-733140940388Auxin response factor 5
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7KG236900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3641441e-107AK364144.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2022B20.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822803.10.0auxin response factor 8-like
SwissprotQ01I350.0ARFJ_ORYSI; Auxin response factor 10
SwissprotQ7XKK60.0ARFJ_ORYSJ; Auxin response factor 10
TrEMBLA0A2T7CXL00.0A0A2T7CXL0_9POAL; Auxin response factor
STRINGSi009541m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51637152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28350.11e-172auxin response factor 10