PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7KG234000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 358aa    MW: 41163.2 Da    PI: 5.6263
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7KG234000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR162.61.1e-191298289
                 FAR1  2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89
                         f+ +Y+ + GF+vrk++ +k+ ++g++ + ++vC +eg+r+e+k+  + +  +ra+trt+C+ ++ v +++ +g ++v++l+leHnH l
  Pavir.7KG234000.1.p 12 FWISYGGQKGFEVRKRYANKR-KDGTVRSCRYVCANEGHRSEDKRG-HLTTCPRAKTRTDCQVRIGVVLDQeKGIYKVADLVLEHNHIL 98
                         999*************99987.8888*****************999.9999****************99999***************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031019.2E-151298IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MEFKTIDEVW MFWISYGGQK GFEVRKRYAN KRKDGTVRSC RYVCANEGHR SEDKRGHLTT  60
CPRAKTRTDC QVRIGVVLDQ EKGIYKVADL VLEHNHILHL PETSHLMASQ RKISELQGFE  120
IETADDAGIR PKAAHDLASL QVGGSCNLSY TLRDHKNYLR GKHQREMAYG QAESMLMYFQ  180
DKIAENPSFQ YALQLDEEEQ IANIFWVDAK MLIDYAYFGD VVSFDTTFGT NKESRPFGVF  240
VGFNHFRETV NATKHLNEAD EEESNISPKQ KAEDNEKEHS ILADFSACMF EYEDEETFGQ  300
AFNTLRAKAS KQSWLDSIYM VKEKWAECYM KDVFALGMRS TQLSESLNSE TEKAFQI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7KG234000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0788400.0AC078840.6 Oryza sativa chromosome 10 BAC OSJNBb0073N24 genomic sequence, complete sequence.
GenBankAC0840230.0AC084023.8 Oryza sativa Japonica Group cultivar Nipponbare chromosome 10 clone OSJNBa0062C05 map S21174S, complete sequence.
GenBankAP0149660.0AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
GenBankCP0126180.0CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025876513.10.0protein FAR1-RELATED SEQUENCE 5-like isoform X2
TrEMBLB9G6I40.0B9G6I4_ORYSJ; Uncharacterized protein
STRINGSb06g020630.11e-168(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-38FAR1-related sequence 5