PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.7KG225200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | CO-like | ||||||||
Protein Properties | Length: 328aa MW: 34413.4 Da PI: 5.2724 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 24.2 | 7e-08 | 22 | 58 | 4 | 37 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg....H 37 r C+ ++ + ++l+C+ + +lC+ C H g H Pavir.7KG225200.1.p 22 RPCDACGAEAARLYCRADAAFLCAGCDARAH-GagsrH 58 68*************************9999.435667 PP | |||||||
2 | zf-B_box | 21.9 | 3.7e-07 | 61 | 103 | 3 | 39 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 + C+ +e+ ++ C+ + lC++C +H+ H++ Pavir.7KG225200.1.p 61 VWLCEVCEHAPAAVTCRADAAALCASCDADIHSAnplarrHER 103 679*****************************65777777876 PP | |||||||
3 | CCT | 70.1 | 5.6e-24 | 238 | 281 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+l+RY+eKrk+R+FeK+irY+sRKa+Ae+RpR+KGrF+k++ Pavir.7KG225200.1.p 238 REARLMRYREKRKSRRFEKTIRYASRKAYAETRPRIKGRFAKRT 281 9****************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 4.7E-8 | 19 | 63 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.523 | 19 | 63 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 5.7E-6 | 22 | 58 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 4.40E-9 | 22 | 63 | No hit | No description |
PROSITE profile | PS50119 | 9.57 | 59 | 106 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 2.1E-5 | 61 | 104 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.59E-7 | 62 | 104 | No hit | No description |
SMART | SM00336 | 3.1E-8 | 64 | 106 | IPR000315 | B-box-type zinc finger |
Pfam | PF06203 | 9.2E-18 | 238 | 280 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 16.876 | 238 | 280 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 328 aa Download sequence Send to blast |
MEGAEKSAGG APAPAYWGLG ARPCDACGAE AARLYCRADA AFLCAGCDAR AHGAGSRHAR 60 VWLCEVCEHA PAAVTCRADA AALCASCDAD IHSANPLARR HERQAVAPFY GALADAPKPF 120 ASSAAVPKAA DDDGSNEAEA ASWLLPEPDH GLKEGATTEV FFADSDPYLD LDFARTMDDI 180 KAIGVQNGPA ELDLTGAKLF YSDHSMNHSV SSSEAAVVPD AAAGAAPVVP VVSRGLEREA 240 RLMRYREKRK SRRFEKTIRY ASRKAYAETR PRIKGRFAKR TPGPGGADGE DPLEEHEEEM 300 YSSAAAAVAA LMAPGGADAD YGVVPTY* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.1919 | 0.0 | leaf| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.7KG225200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ727984 | 0.0 | KJ727984.1 Zea mays clone pUT6100 C2C2-CO-like transcription factor (COL7) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025825843.1 | 0.0 | zinc finger protein CONSTANS-LIKE 3-like | ||||
Swissprot | Q9SK53 | 2e-72 | COL3_ARATH; Zinc finger protein CONSTANS-LIKE 3 | ||||
TrEMBL | A0A2S3I805 | 0.0 | A0A2S3I805_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J38013.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2191 | 32 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24790.1 | 6e-46 | CONSTANS-like 3 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.7KG225200.1.p |
Publications ? help Back to Top | |||
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