PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.7KG223400.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Nin-like

Protein Properties

Length: 942aa MW: 102592 Da PI: 6.5064

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.7KG223400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	85.4	5.2e-27	565	615	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+ sl++l+kyFs++++dAA +Lgvc+T+LKriCRq+GI+RWP+Rki+++ Pavir.7KG223400.1.p 565 EKNFSLDVLRKYFSGSLRDAAMSLGVCPTTLKRICRQHGISRWPSRKINKV 615 899**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.79	554	635	IPR003035	RWP-RK domain
Pfam	PF02042	1.5E-24	568	615	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.07E-23	830	921	No hit	No description
Gene3D	G3DSA:3.10.20.240	7.9E-22	835	917	No hit	No description
PROSITE profile	PS51745	24.819	838	920	IPR000270	PB1 domain
SMART	SM00666	1.8E-19	838	920	IPR000270	PB1 domain
Pfam	PF00564	2.4E-16	839	919	IPR000270	PB1 domain
CDD	cd06407	9.97E-31	839	919	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 942 aa Download sequence Send to blast
MDMPMPSNRA GCNGNISSPM GSSDDPFGVA ATMNFDGYSE LCSPSVADQI FSMLNDPSAA 60 QQMFAMWSSL GSSPRASAMR DDMPFDTYSG PMDATAASTQ KSNSASALSP TGVDRELKVS 120 DELVPHNGSQ QGSNIIPRSV GNFLADKMLM ALSLFRKSLS DGVLAQVWMP VEHNGRVLLS 180 TFEQPFLLDQ DLAGYREVSR NFLFSVKEEP GLHLGLPGRV FISGVPEWTS SVLYYSKLEY 240 LRMDYALRHE IRGSLAMPIY DPSKGSCCAV LELVTNKEKS DFDAEMDSVC NALQAVNLLT 300 TTDRSNQKVY SENQKSAFTE ILDVLRAICH AHMLPLALTW VPTSNGIHNG YCAGKNIGVD 360 SQSGKAVLRI HESACYINDA KMQGFLHACT ERHLEKGEGI AGRALKSNLP FFSPDIREYS 420 IEDYPLAHHA RKFGLHAAVA IRLRSTHTGN DYILEFFLPV NCKGCEEQQV LLNNLSSTMQ 480 RICKSLRTVS EAEADNSGTS GTAMHKKTNG TLPTGNTESS SHDDQPITES AFQDLSLGDK 540 QGDREPDQAH SSSMRVAEKK RSTSEKNFSL DVLRKYFSGS LRDAAMSLGV CPTTLKRICR 600 QHGISRWPSR KINKVNRSLK KIQTVINSVH GVDRSLQYDP ATGSLVPAAS LPDKMQFSAC 660 DTLPTSSVGK PMEEKSSPKS EQGFSSPVGW QRETRQFHVS SISKREGDEV RMLANNNNGS 720 RNCASDVAKV TPHSNSEGAQ GPLYPIGGVN ALCTGQIGYI NSPTSLHPSI DSAEDPTMGR 780 NSSFVQQADV IMVDGHDTKE HTHPSTSGTT DSSSGSASSQ PCFKGNPGNV PKDRSSPALT 840 VKATYNSDTV RFKFLPAMGW YHLLEEIAKR FKLTTGAFQL KYKDDEDEWV ILANDSDLQE 900 CVDVLDSIGS HNVKLLVRDL PCLVSSSGSS SCLMQVEAHS P*

Sequence ? help Back to Top

Protein Sequence Length: 942 aa Download sequence Send to blast

MDMPMPSNRA GCNGNISSPM GSSDDPFGVA ATMNFDGYSE LCSPSVADQI FSMLNDPSAA  60
QQMFAMWSSL GSSPRASAMR DDMPFDTYSG PMDATAASTQ KSNSASALSP TGVDRELKVS  120
DELVPHNGSQ QGSNIIPRSV GNFLADKMLM ALSLFRKSLS DGVLAQVWMP VEHNGRVLLS  180
TFEQPFLLDQ DLAGYREVSR NFLFSVKEEP GLHLGLPGRV FISGVPEWTS SVLYYSKLEY  240
LRMDYALRHE IRGSLAMPIY DPSKGSCCAV LELVTNKEKS DFDAEMDSVC NALQAVNLLT  300
TTDRSNQKVY SENQKSAFTE ILDVLRAICH AHMLPLALTW VPTSNGIHNG YCAGKNIGVD  360
SQSGKAVLRI HESACYINDA KMQGFLHACT ERHLEKGEGI AGRALKSNLP FFSPDIREYS  420
IEDYPLAHHA RKFGLHAAVA IRLRSTHTGN DYILEFFLPV NCKGCEEQQV LLNNLSSTMQ  480
RICKSLRTVS EAEADNSGTS GTAMHKKTNG TLPTGNTESS SHDDQPITES AFQDLSLGDK  540
QGDREPDQAH SSSMRVAEKK RSTSEKNFSL DVLRKYFSGS LRDAAMSLGV CPTTLKRICR  600
QHGISRWPSR KINKVNRSLK KIQTVINSVH GVDRSLQYDP ATGSLVPAAS LPDKMQFSAC  660
DTLPTSSVGK PMEEKSSPKS EQGFSSPVGW QRETRQFHVS SISKREGDEV RMLANNNNGS  720
RNCASDVAKV TPHSNSEGAQ GPLYPIGGVN ALCTGQIGYI NSPTSLHPSI DSAEDPTMGR  780
NSSFVQQADV IMVDGHDTKE HTHPSTSGTT DSSSGSASSQ PCFKGNPGNV PKDRSSPALT  840
VKATYNSDTV RFKFLPAMGW YHLLEEIAKR FKLTTGAFQL KYKDDEDEWV ILANDSDLQE  900
CVDVLDSIGS HNVKLLVRDL PCLVSSSGSS SCLMQVEAHS P*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.7977	0.0	callus\| leaf

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.7KG223400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ727756	0.0	KJ727756.1 Zea mays clone pUT5699 NLP transcription factor (NLP3) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025823107.1	0.0	protein NLP2-like
Swissprot	Q0JC27	0.0	NLP2_ORYSJ; Protein NLP2
TrEMBL	A0A2S3I833	0.0	A0A2S3I833_9POAL; Uncharacterized protein
STRING	Pavir.Ga01502.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3670	35	73

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59580.2	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Pavir.7KG223400.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]