PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7KG219200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GATA
Protein Properties Length: 394aa    MW: 43285.8 Da    PI: 7.9609
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7KG219200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA51.41.5e-16741135
                 GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                         C++Cg+t+TplWR+gp  ++ LCnaCG ++r kg+
  Pavir.7KG219200.1.p  7 CRHCGVTSTPLWRNGPPDKPVLCNACGSRWRTKGS 41
                         ****************55555***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.5E-10153IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.38E-11545No hitNo description
CDDcd002022.99E-15640No hitNo description
PROSITE profilePS5011411.345740IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.9E-12741IPR013088Zinc finger, NHR/GATA-type
PfamPF003202.2E-14741IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MGKQGPCRHC GVTSTPLWRN GPPDKPVLCN ACGSRWRTKG SLANYTPMHR KDDIDDDEPR  60
VSKLKPPTSK LKSQKKKASH IIMENVPFSG QNFRKMGDAD TSNRSSLGSA ISYSESCAPY  120
GDVDASEMSG SAQSHAWESL VPSRKRSCVT RPKASPVEKL VKDLKSIMHE DQLYYLSGSS  180
EEDLLYHSET PVGSFEIGSG SVLLRHPNSK SPEEESEASS IPSDGKSYIT SESYSGSALF  240
VVHDGNKGTV NLNAAIARPK RLSLHIEDNA SRDKLHCEKQ HILESIDSPL VSVDLEEKEI  300
KEIGGVENIS ESIGFAGSTM KLLKRSHDTH IQGDSDAEVK SIGWHWQVVL SRCKSVHAYC  360
LLDVFATVTG STICHLLKFL KVQRLGRFQN KNF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.178660.0callus| leaf| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7KG219200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825663.10.0GATA transcription factor 26-like isoform X2
TrEMBLA0A2T7CWQ20.0A0A2T7CWQ2_9POAL; Uncharacterized protein
STRINGPavir.Ga01522.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44243464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.31e-64GATA transcription factor 26