PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7KG213800.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 413aa    MW: 44296.6 Da    PI: 9.9376
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7KG213800.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.21.1e-11353398655
                          HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +++Er RR ri +++ +L+ l+P+     +k  s a++L +Av++I+ Lq
  Pavir.7KG213800.2.p 353 SIAERERRTRISEKLRKLQALVPNM----DKQTSTADMLDLAVDHIRGLQ 398
                          689*********************7....688****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.475347397IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.95E-14350403IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.14E-12351402No hitNo description
SMARTSM003536.3E-13353403IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.7E-9353398IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-11353401IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MCPWVGVGEA WSGRSRVIAL STAARSSLAA FARRHTRKSN PPHLQSSDLK RAASGARRTG  60
KFEPASCPRR RGWGRSAQAM DPPPQRGRSR YGGGGGSSWQ QFPFVVDPTE APGAAAVRAF  120
FPAPGGEAPP SSSGDRALPG QQQQQRYGHG EISLGHGQGT MHHRYHQFGV EGKRDGGPSA  180
AELPRHSSSP PEFFSSPVMD HGFPRTGVGV GGEVPHAMSS YHKKMKAPMN LAGQGTLSHI  240
SEDGIPDLTS NVIGIGHSEE NITANGVACS FSSGFSIGPW EDSNSIVFSN PASKAGIHNN  300
DDNDIIASLS NYELQFGVTK ETAGGMDKYM QMQQDQVPFR VRAKRGCATH PRSIAERERR  360
TRISEKLRKL QALVPNMDKQ TSTADMLDLA VDHIRGLQGE LQIAALIAIF NC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7KG213800.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825346.11e-175transcription factor bHLH129-like
TrEMBLA0A2T7CWM61e-176A0A2T7CWM6_9POAL; Uncharacterized protein
STRINGPavir.Gb01377.1.p1e-169(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.12e-35bHLH family protein