PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.7KG213800.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 413aa MW: 44296.6 Da PI: 9.9376 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.2 | 1.1e-11 | 353 | 398 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+ l+P+ +k s a++L +Av++I+ Lq Pavir.7KG213800.2.p 353 SIAERERRTRISEKLRKLQALVPNM----DKQTSTADMLDLAVDHIRGLQ 398 689*********************7....688****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.475 | 347 | 397 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 9.95E-14 | 350 | 403 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.14E-12 | 351 | 402 | No hit | No description |
SMART | SM00353 | 6.3E-13 | 353 | 403 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.7E-9 | 353 | 398 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.1E-11 | 353 | 401 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 413 aa Download sequence Send to blast |
MCPWVGVGEA WSGRSRVIAL STAARSSLAA FARRHTRKSN PPHLQSSDLK RAASGARRTG 60 KFEPASCPRR RGWGRSAQAM DPPPQRGRSR YGGGGGSSWQ QFPFVVDPTE APGAAAVRAF 120 FPAPGGEAPP SSSGDRALPG QQQQQRYGHG EISLGHGQGT MHHRYHQFGV EGKRDGGPSA 180 AELPRHSSSP PEFFSSPVMD HGFPRTGVGV GGEVPHAMSS YHKKMKAPMN LAGQGTLSHI 240 SEDGIPDLTS NVIGIGHSEE NITANGVACS FSSGFSIGPW EDSNSIVFSN PASKAGIHNN 300 DDNDIIASLS NYELQFGVTK ETAGGMDKYM QMQQDQVPFR VRAKRGCATH PRSIAERERR 360 TRISEKLRKL QALVPNMDKQ TSTADMLDLA VDHIRGLQGE LQIAALIAIF NC* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.7KG213800.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025825346.1 | 1e-175 | transcription factor bHLH129-like | ||||
TrEMBL | A0A2T7CWM6 | 1e-176 | A0A2T7CWM6_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Gb01377.1.p | 1e-169 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G05805.1 | 2e-35 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.7KG213800.2.p |