PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.7KG173000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 192aa MW: 21176.6 Da PI: 8.1062 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 37.9 | 3.2e-12 | 121 | 166 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+ l+P+ +k s a++L +Av++I+ Lq Pavir.7KG173000.1.p 121 SIAERERRTRISEKLRKLQALVPNM----DKQTSTADMLDLAVDHIRGLQ 166 689*********************7....688*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.475 | 115 | 165 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 9.95E-16 | 118 | 180 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.48E-12 | 119 | 170 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 3.8E-14 | 120 | 179 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.4E-9 | 121 | 166 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.1E-13 | 121 | 171 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence Send to blast |
MNLTRQGALS QISEDGIPDL TNNVHGIGHG EENITANNVA RSFSTGFSIG SWEDSNSIVF 60 SNPASKGVHN NDDIIASLSN YELQFGALKE TTGIDKYLQM QHDQVPFRVR AKRGCATHPR 120 SIAERERRTR ISEKLRKLQA LVPNMDKQTS TADMLDLAVD HIRGLQSELQ GLKEDKEKCT 180 CRGNNRPSSG R* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.7KG173000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025825346.1 | 1e-118 | transcription factor bHLH129-like | ||||
Swissprot | Q8H102 | 3e-42 | BH128_ARATH; Transcription factor bHLH128 | ||||
TrEMBL | A0A1B6PLQ5 | 1e-117 | A0A1B6PLQ5_SORBI; Uncharacterized protein | ||||
TrEMBL | A0A2S3I7V0 | 1e-117 | A0A2S3I7V0_9POAL; Uncharacterized protein | ||||
STRING | Si010513m | 1e-115 | (Setaria italica) | ||||
STRING | Sb06g020810.1 | 1e-116 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14188 | 20 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G05805.1 | 1e-44 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.7KG173000.1.p |
Publications ? help Back to Top | |||
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