PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.7KG169300.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 318aa MW: 36632.5 Da PI: 7.7197

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.7KG169300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	60.1	7.1e-19	51	138	2	89
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 f+ Y+ + GF+vrk++++k+ + +it+ +f C keg+r+++k++ + ++ +raetrt+ + +++k+++ ++ +v++l+leHnH l Pavir.7KG169300.1.p 51 FWLGYGGQKGFEVRKKYTNKRASDSKITSCRFICAKEGRRSQDKRD-HLTKCPRAETRTESQVYMNLKMDRkKEILKVSELVLEHNHGL 138 9999*************************************999.999***************998999**********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.9E-14	51	138	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	8.9E-10	261	315	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 318 aa Download sequence Send to blast
MKFFFNTSEM EEEANKQEAS NAHHDSNTTI LLALVPQVGM EFRTSDEAWA FWLGYGGQKG 60 FEVRKKYTNK RASDSKITSC RFICAKEGRR SQDKRDHLTK CPRAETRTES QVYMNLKMDR 120 KKEILKVSEL VLEHNHGLHL PETLHLMVSQ RKITDLQAFE IETADDAGIG PKAAHELASR 180 QVGGPLNLSY TLRDHKNYLH SKRQRKMGYG QAGSMLKYFQ DTIAENPSFQ YALQMDCDEQ 240 IATIFWADAK MIMDYAHFGD VVSFDTTFGT NKERRPFGVF VEFNHFRETV VFGAALLYDK 300 TFDSFKWLFE TFLKAHN*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.7KG169300.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024314647.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	Q6RYE2	1e-174	Q6RYE2_TRIMO; Putative transposase
STRING	BRADI2G59232.1	1e-172	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-55	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Pavir.7KG169300.1.p