PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7KG159600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ZF-HD
Protein Properties Length: 306aa    MW: 31704.4 Da    PI: 7.2512
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7KG159600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer88.28e-282572557
          ZF-HD_dimer  5 rYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57
                         +YkeC++NhAa++Gg+a+DGCgE+mps     +++ lkCaACgCHR+FHRr+ 
  Pavir.7KG159600.1.p 25 KYKECMRNHAAAMGGQAFDGCGEYMPS-----SPDQLKCAACGCHRSFHRRDA 72
                         7*************************9.....7899***************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR015664.6E-242571IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047709.0E-232571IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257744.0E-202570IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.1712671IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466892.26E-18174243IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.5E-29176244IPR009057Homeodomain-like
TIGRFAMsTIGR015651.1E-26185242IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MMEMDQHQLS MVPYEGAGAG GGGGKYKECM RNHAAAMGGQ AFDGCGEYMP SSPDQLKCAA  60
CGCHRSFHRR DAGSSSCGGA APPVFFRPPP APLPALLPAP PPHYQHHHHH HHQAALQAFL  120
PWVPAAAAPP HLALPYHPAA AAPWLARSGS ETPPRADDFG VAGLGLGGAA GSAGGAGSGG  180
GGFGRKRFRT KFTPEQKERM REFAAKQGWR IQRNDDGALE RFCDEIGVKR QVLKVWMHNH  240
KNQLASTSPA AAGIGISPAA AGIGIRPAAP GMGAGDGDDD DDDDETDDSP PRAAVSSPSP  300
SPISV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A1e-241862471879ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7KG159600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004975654.11e-103zinc-finger homeodomain protein 8-like
SwissprotQ7X7N33e-73ZHD8_ORYSJ; Zinc-finger homeodomain protein 8
TrEMBLA0A368RTW71e-102A0A368RTW7_SETIT; Uncharacterized protein
STRINGOMERI04G10740.16e-75(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP136492225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14440.25e-24homeobox protein 31