PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7KG152800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GRAS
Protein Properties Length: 347aa    MW: 36731 Da    PI: 9.0115
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7KG152800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS228.82.5e-70233384374
                 GRAS  84 fsevsPilkfshltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRpeg...................ppslRiTgvgspes 152
                          f+++sP+++f+h+taNqaIlea+e    + +H++Dfd+s+G+QWp+L+q+L++ ++                    p slRiTg+g    
  Pavir.7KG152800.1.p   2 FYQASPLYQFAHFTANQAILEAFEAGgrRSLHVVDFDVSYGFQWPSLIQSLSDAAAAadadaastsgshdgahrkePVSLRITGLGT--- 88 
                          9**********************97765899*********************88844456778888999999999777*********... PP

                 GRAS 153 gskeeleetgerLakfAee.lgvpfefnvlvakrledleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvv 239
                           s++el++t+ rLa+fA+  l+v+fef+ +v++  ++ + e++r +   + +++Vnl++   +    s +++ e  + L  ++sl+P +v
  Pavir.7KG152800.1.p  89 -SADELRQTEARLARFASGcLNVRFEFEGVVTSGPSSGRHERIRNDDdgDATVVVNLAFPAASQS--SRTSAREACSALARIRSLNPSLV 175
                          .9***************8538*********999***********999977788899999666665..444444569************** PP

                 GRAS 240 vvveqeadhnse......sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvac........egaerrerhetlekW 315
                           +ve+    n++      s++  f+ +l+y++a+fdsl+++lp++s er  +Er +lg ei+n+vac           ++ e + t+++W
  Pavir.7KG152800.1.p 176 FLVERGGGGNAApprgrsSLVPPFTASLRYFAAVFDSLHESLPADSAERLAIERNYLGTEIRNAVACldrghgggGDHHSMEPCSTAASW 265
                          ******9988877777779************************************************4433332112346788999**** PP

                 GRAS 316 rerleeaGFkpvplsekaakqaklllrkvk.sdg.......yrveee..sgslvlgWkdrpLvsvSaWr 374
                          +e++e+aGF++v+ls+++++qaklll++ +   g       +rv e     ++ lgW+d +L++++aWr
  Pavir.7KG152800.1.p 266 KEMMESAGFEAVALSSRTVSQAKLLLKMKSgC-GgggggggFRVVEGggGRAMSLGWRDSALITTTAWR 333
                          ***************************98742.22456777**99984233455**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098542.6231304IPR005202Transcription factor GRAS
PfamPF035148.5E-682333IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MFYQASPLYQ FAHFTANQAI LEAFEAGGRR SLHVVDFDVS YGFQWPSLIQ SLSDAAAAAD  60
ADAASTSGSH DGAHRKEPVS LRITGLGTSA DELRQTEARL ARFASGCLNV RFEFEGVVTS  120
GPSSGRHERI RNDDDGDATV VVNLAFPAAS QSSRTSAREA CSALARIRSL NPSLVFLVER  180
GGGGNAAPPR GRSSLVPPFT ASLRYFAAVF DSLHESLPAD SAERLAIERN YLGTEIRNAV  240
ACLDRGHGGG GDHHSMEPCS TAASWKEMME SAGFEAVALS SRTVSQAKLL LKMKSGCGGG  300
GGGGGFRVVE GGGGRAMSLG WRDSALITTT AWRRRRRRRS ISKTSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-341335101381Protein SCARECROW
5b3h_A2e-341335100380Protein SCARECROW
5b3h_D2e-341335100380Protein SCARECROW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1332338RRRRRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7KG152800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2432540.0AC243254.2 Panicum virgatum clone PV_ABa094-K10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025823551.10.0scarecrow-like protein 23
TrEMBLA0A3L6Q7350.0A0A3L6Q735_PANMI; DELLA protein DWARF8-like
STRINGPavir.Ga01810.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP116493038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.13e-36GRAS family protein