PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7KG134100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 357aa    MW: 37857.3 Da    PI: 5.8322
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7KG134100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.33.8e-10149193655
                          HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                             Er+RR r+++++ eLr+l+P+      +K++Ka+i   Av Y+++Lq
  Pavir.7KG134100.1.p 149 IVSERKRRVRMKEKLYELRSLVPNI-----TKMDKASIIADAVVYVRNLQ 193
                          568*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.7E-15140210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.52E-13140194No hitNo description
Gene3DG3DSA:4.10.280.101.9E-15140209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.294143192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.2E-8149193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-11149198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MDMVEHQLLH FSPQEHFMAS PGFFAAVDGG HFQTGGFVVE PPVGVVAGIE DGGWVEDLMQ  60
LGDELFGGGD VIAAGTGDHH QPWQFDDNGG SPDDPPPSVS VDGRDGSPRS AEQGAGDGEL  120
ASEPHRDREN GGDASPATTR KRRDRSKTIV SERKRRVRMK EKLYELRSLV PNITKMDKAS  180
IIADAVVYVR NLQAHAGKLK EEVVALEARP RSPPAGAGHE QQRLRSGGRA AAAAARRLQD  240
RGGDDGAGRR GHGAAVTRVG VAQVGDGRFF VTVECERRDG VAAPLCAAVE SLACFRVEIS  300
SLVPSGPDRV VSTLTLKVSE QVGDASTICE GSVKLWVMAA LLKEGFRPEA TVEISS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1140155KRRDRSKTIVSERKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7KG134100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8350405e-70CT835040.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA119K17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825747.11e-160transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR-like
TrEMBLA0A3L6PRK61e-162A0A3L6PRK6_PANMI; Transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR-like
STRINGPavir.J29678.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55463057
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28160.13e-36FER-like regulator of iron uptake