PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.7KG122300.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | S1Fa-like | ||||||||
Protein Properties | Length: 80aa MW: 8749.49 Da PI: 10.4802 | ||||||||
Description | S1Fa-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | S1FA | 137.8 | 2.3e-43 | 11 | 79 | 2 | 70 |
S1FA 2 avakveakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70 +v ++e+kGlnPG+ivllvv+++ll+f+vgny+lyvyaqk+lPP+kkkPvskkklkreklkqGv++PGe Pavir.7KG122300.2.p 11 NVIIEEVKGLNPGMIVLLVVASFLLLFFVGNYALYVYAQKTLPPKKKKPVSKKKLKREKLKQGVSAPGE 79 667899**************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD019013 | 3.0E-6 | 12 | 79 | No hit | No description |
Pfam | PF04689 | 1.9E-39 | 15 | 79 | IPR006779 | DNA binding protein S1FA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 80 aa Download sequence Send to blast |
MVDQFADSAN NVIIEEVKGL NPGMIVLLVV ASFLLLFFVG NYALYVYAQK TLPPKKKKPV 60 SKKKLKREKL KQGVSAPGE* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.3123 | 1e-116 | callus| leaf| root| stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | DNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.7KG122300.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT016336 | 4e-76 | BT016336.1 Zea mays clone Contig169 mRNA sequence. | |||
GenBank | EU953686 | 4e-76 | EU953686.1 Zea mays clone 1444070 DNA-binding protein S1FA2 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015633609.1 | 4e-30 | DNA-binding protein S1FA2 | ||||
Swissprot | Q7XLX6 | 4e-31 | S1FA2_ORYSJ; DNA-binding protein S1FA2 | ||||
TrEMBL | A0A0D3FVJ5 | 4e-29 | A0A0D3FVJ5_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0D9ZKE5 | 4e-29 | A0A0D9ZKE5_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0H0D2 | 4e-29 | A0A0E0H0D2_ORYNI; Uncharacterized protein | ||||
TrEMBL | A0A0E0P8S3 | 4e-29 | A0A0E0P8S3_ORYRU; Uncharacterized protein | ||||
STRING | Pavir.Ga01929.1.p | 5e-49 | (Panicum virgatum) |
Link Out ? help Back to Top | |
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Phytozome | Pavir.7KG122300.2.p |
Publications ? help Back to Top | |||
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