PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7KG122300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family S1Fa-like
Protein Properties Length: 80aa    MW: 8749.49 Da    PI: 10.4802
Description S1Fa-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7KG122300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1S1FA137.82.3e-431179270
                 S1FA  2 avakveakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70
                         +v ++e+kGlnPG+ivllvv+++ll+f+vgny+lyvyaqk+lPP+kkkPvskkklkreklkqGv++PGe
  Pavir.7KG122300.1.p 11 NVIIEEVKGLNPGMIVLLVVASFLLLFFVGNYALYVYAQKTLPPKKKKPVSKKKLKREKLKQGVSAPGE 79
                         667899**************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0190133.0E-61279No hitNo description
PfamPF046891.9E-391579IPR006779DNA binding protein S1FA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 80 aa     Download sequence    Send to blast
MVDQFADSAN NVIIEEVKGL NPGMIVLLVV ASFLLLFFVG NYALYVYAQK TLPPKKKKPV  60
SKKKLKREKL KQGVSAPGE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.31231e-116callus| leaf| root| stem
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7KG122300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0163364e-76BT016336.1 Zea mays clone Contig169 mRNA sequence.
GenBankEU9536864e-76EU953686.1 Zea mays clone 1444070 DNA-binding protein S1FA2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633609.14e-30DNA-binding protein S1FA2
SwissprotQ7XLX64e-31S1FA2_ORYSJ; DNA-binding protein S1FA2
TrEMBLA0A0D3FVJ54e-29A0A0D3FVJ5_9ORYZ; Uncharacterized protein
TrEMBLA0A0D9ZKE54e-29A0A0D9ZKE5_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0H0D24e-29A0A0E0H0D2_ORYNI; Uncharacterized protein
TrEMBLA0A0E0P8S34e-29A0A0E0P8S3_ORYRU; Uncharacterized protein
STRINGPavir.Ga01929.1.p5e-49(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51543563
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]