PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7KG106700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C3H
Protein Properties Length: 857aa    MW: 93064.6 Da    PI: 5.1304
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7KG106700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.79.7e-095280125
                         --S---SGGGGTS....--TTTTT-SS-S CS
              zf-CCCH  1 yktelCrffartG....tCkyGdrCkFaH 25
                         +kt+lC+ff+r G     C++Gd+C++aH
  Pavir.7KG106700.1.p 52 WKTSLCSFFRRRGagaeGCSHGDSCRYAH 80
                         8**************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.3E-124888IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.51E-64987IPR000571Zinc finger, CCCH-type
SMARTSM003565.3E-45182IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.8175183IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-65280IPR000571Zinc finger, CCCH-type
CDDcd005908.22E-7128194No hitNo description
Gene3DG3DSA:3.30.70.3304.4E-7130203IPR012677Nucleotide-binding alpha-beta plait domain
SuperFamilySSF549281.51E-7131204IPR012677Nucleotide-binding alpha-beta plait domain
PROSITE profilePS5168742.149245856IPR010280(Uracil-5)-methyltransferase family
SuperFamilySSF533351.13E-47247273IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533351.13E-47305432IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533351.13E-47480596IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene3DG3DSA:3.40.50.1506.3E-62493596IPR029063S-adenosyl-L-methionine-dependent methyltransferase
PfamPF138474.4E-9536598IPR025714Methyltransferase domain
CDDcd024406.47E-7542596No hitNo description
Gene3DG3DSA:3.40.50.1506.3E-62737796IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533351.13E-47744856IPR029063S-adenosyl-L-methionine-dependent methyltransferase
PfamPF059582.1E-6747792IPR010280(Uracil-5)-methyltransferase family
PROSITE patternPS012300752784IPR030390RNA methyltransferase TrmA, active site
Gene3DG3DSA:3.40.50.1506.3E-62831856IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006396Biological ProcessRNA processing
GO:0000166Molecular Functionnucleotide binding
GO:0008173Molecular FunctionRNA methyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 857 aa     Download sequence    Send to blast
MEDATTPPSQ PELAGEKRKR EEGSPDAAVQ DAPSAPVASG EDASGGGRHP MWKTSLCSFF  60
RRRGAGAEGC SHGDSCRYAH TEEELRPRPD GTWDPTSDRA KKLRKVAAEA QEEAEEEVTA  120
DEQSLDKCLL GLPRGWTADR LKTFLQDQGI LYATAKKKKG MTVGFVTFES VEQLTRAVQF  180
LKENPSGGKE IKISDANRRS HQKVRAEGHV ANGTAIENGS SPATPAGETS APEVVASSKK  240
SARDAVTPLA HMPYNDQLEH KKHSMAQILK RLTRNARKAC PPAIPLPNWI FKSKEIGGLP  300
CKLEGILESP IVDGYRNKCE FSVGYSLEGK KTVGFMLGNF REGVTAVEEP VNCPNVSEIS  360
CKYAQMFQDF LQSSSLPLWS RVDNCGFWRQ FTVREGRCPA EAVVLQQVES QISEVMLIVQ  420
VCSTDVDEAL MKEEFDKLSA ALIQGASTCS PPLPLTTIVV QDHKGISNAA PADCPLIPLL  480
VPKGDQFEGG AEDKTRIHDH ISNLKFSISP TAFFQVNTLA AERLYTLAGD WANLNSDTLL  540
FDVCCGTGTI GLTLAHRVGM VVGIEMNESA VSDAHRNALI NGIKNCRFVC GKAEDVIGSL  600
LIEYLGSPQQ HIAASESNYV INDTGKNEDT INCPESDGEN MDSSTEKNDN GENEQPGDRS  660
VDLPTCCGDE DIKGDSVDRV NKEADSSPDE HIEAAVEQNC GEASLINDEP TDATSADSLE  720
HGKMCQDSSS IQNNNGLPAS ACQFKNVVAI VDPPRVGLHP TVIKALRTHP LIRRLVYISC  780
NPDSLVANAI ELCTPTSEKQ EKNKGNRGWR SMSAAGLARQ RTKSMPNSEP FIPKRAMAVD  840
LFPHTSHCEM VMLFER*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5xj1_A4e-1629160394371Uncharacterized RNA methyltransferase SP_1029
5xj2_A4e-1629160394371Uncharacterized RNA methyltransferase SP_1029
5xj2_B4e-1629160394371Uncharacterized RNA methyltransferase SP_1029
5xj2_C4e-1629160394371Uncharacterized RNA methyltransferase SP_1029
5xj2_D4e-1629160394371Uncharacterized RNA methyltransferase SP_1029
5zq0_A4e-1629160395372Uncharacterized RNA methyltransferase SP_1029
5zq1_A3e-1629160394371Uncharacterized RNA methyltransferase SP_1029
5zq8_A4e-1629160394371Uncharacterized RNA methyltransferase SP_1029
5zq8_B4e-1629160394371Uncharacterized RNA methyltransferase SP_1029
5zth_A4e-1629160395372Uncharacterized RNA methyltransferase SP_1029
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.226020.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7KG106700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7269830.0KJ726983.1 Zea mays clone pUT3684 C3H transcription factor (C3H10) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025824350.10.0zinc finger CCCH domain-containing protein 24
TrEMBLA0A3L6PT310.0A0A3L6PT31_PANMI; Zinc finger CCCH domain-containing protein 24
STRINGPavir.J09831.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP84933131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28450.10.0C3H family protein