PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.7KG102000.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 311aa MW: 36293.4 Da PI: 8.3025

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.7KG102000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	41.4	4.6e-13	28	118	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.........krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkl 81 ++Yn Y+ e+GF +r k+++s ++++ +++f+C ++g++++e k+ ++ rt+C akl++ +++d++w+v + Pavir.7KG102000.1.p 28 EYYNLYSWECGFGIRCGKKSYSmtreslklpQEKRYQLSQEFNCCCSGRPSRELKT--------TSARTNCPAKLQLGRTTDHRWVVVEH 109 69************99999988899999878888899*******999888........899******************* PP FAR1 82 eleHnHela 90 + HnHe++ Pavir.7KG102000.1.p 110 SPIHNHEMS 118 *****97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.7E-10	28	118	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.0E-16	241	305	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence Send to blast
MKFADRNSEY IINPAVGTKF DDCEEAYEYY NLYSWECGFG IRCGKKSYSM TRESLKLPQE 60 KRYQLSQEFN CCCSGRPSRE LKTTSARTNC PAKLQLGRTT DHRWVVVEHS PIHNHEMSET 120 YGENKLWPSH THLDKYTRSL VRMLRENNVP ITKLYSILGT FFGKMENVPT TKRCLKNLCH 180 KINREQAEND IKKTLNLFGE FMKDDPGFMY SIGQDEDGRI KTMIWTNSKS RMQYEHFGDA 240 ITFDTTYKTN MYEMPFRLFV GVNNHFQSVL LGGVLMTDEK IETFRWIFKE FTRLMGGKEP 300 VTILTGESAY *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.7KG102000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024317136.1	1e-116	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A453G3W1	1e-119	A0A453G3W1_AEGTS; Uncharacterized protein
STRING	Pavir.J10827.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP619	19	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	5e-37	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Pavir.7KG102000.1.p