PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.7KG083700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB_related | ||||||||
Protein Properties | Length: 437aa MW: 47352.9 Da PI: 5.8802 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.8 | 9e-17 | 61 | 105 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT eE+e++++a k++G W+ I +++g ++t+ q++s+ qk+ Pavir.7KG083700.1.p 61 REKWTDEEHEKFLEALKLYGRS-WRQIQEHIG-TKTAVQIRSHAQKF 105 789*****************55.*********.************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 6.36E-16 | 55 | 109 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 21.662 | 56 | 110 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.8E-10 | 58 | 108 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.2E-15 | 59 | 108 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 3.2E-14 | 60 | 108 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.1E-14 | 61 | 104 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.12E-11 | 63 | 106 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 437 aa Download sequence Send to blast |
MASMVQLEER DGLDSSGLPI DKRRPLDAAK SPLMDDSMQP KEGMDGYPVK VRKPYTITKQ 60 REKWTDEEHE KFLEALKLYG RSWRQIQEHI GTKTAVQIRS HAQKFFSKVV REPGASNAIE 120 IPPPRPKRKP LHPYPRKCAD SSTIANPAMG QPKLASISSS SGSDQENGSP VSVLSAMQSD 180 AFGSSVSNPS TGCTSPASSD DGNNVPVLVN EENLLTQQIE DDQSGQELKL DNSDGDLSEE 240 DSSSGVQETS LKLFGKTVII PDTKKVCSSD GECGDGEKRS QSSEQEASQA SSIGGIAAYP 300 AHNGWLLPYH SLQFHMGESD ARISPLHVWW PCYGFPVGDP RGFGMGLHIE GTCESDTDKS 360 PSVESSSNCM SYIQSMAPTN CKVVKESLGG AIQVPEPALS FELKPSANSA FIRVKPGSNR 420 GQSVRGFVPY KRFKVQ* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.13024 | 0.0 | leaf| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.7KG083700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004966527.1 | 0.0 | uncharacterized protein LOC101785788 | ||||
TrEMBL | A0A3L6S0P2 | 0.0 | A0A3L6S0P2_PANMI; Uncharacterized protein | ||||
STRING | Pavir.J00602.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7783 | 36 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G37260.1 | 1e-39 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.7KG083700.1.p |