PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7KG076500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 481aa    MW: 51107.8 Da    PI: 4.058
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7KG076500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.45.3e-112163346
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                         +WT +E +ll++a + + g+ W+ Ia+++  ++t +qc +++++
  Pavir.7KG076500.1.p 21 NWTDQETLLLLEALEIFKGKEWDEIAEHVA-TKTKEQCMLYFLQ 63
                         8*****************************.**********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129320.131769IPR017884SANT domain
SuperFamilySSF466891.42E-101869IPR009057Homeodomain-like
SMARTSM007173.1E-101867IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-72163IPR009057Homeodomain-like
PfamPF002492.2E-102164IPR001005SANT/Myb domain
CDDcd001676.42E-43664No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MSKADFILME YAEVPGSGGS NWTDQETLLL LEALEIFKGK EWDEIAEHVA TKTKEQCMLY  60
FLQMPIFDSF LDGEDINETP QKITEQDSAE TGTLGVPEDM DVGDNAEGKE SADENTCKKA  120
NANSSETGTK IADQSVSAKV NTMNLGDNDL VSSSIVDESN KSSLMDPANK KKSTDADVSE  180
EQASDFVSGV LRSTFEAVGH FPGKDDLGSF AEAGNSVMAL AGFLASLVER DDAVTSCCSS  240
LRAISAISPA LQLATGHCFI LPDPPSNLKD LTSNYSSCTG GECQGGADGT QNVNDTDKDS  300
SKREESALTL EKEDASPKEC LELSNTEESF VEGPQAEVKS NSTKDPDNPT AASDKMRDGC  360
NTIPGSAASN NTNEPGSVTS QEASAASANA TTNREQLEGE KLSSKELPDD DSPSQGRVVP  420
KEIECAPMAS SSMQQHKSNQ TGSGNTEETY KQTKTLLLLL LSPTNKATAS CSYCRFQQLQ  480
*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.92390.0callus| leaf| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7KG076500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825803.10.0SWI/SNF complex subunit SWI3D-like isoform X1
RefseqXP_025825804.10.0SWI/SNF complex subunit SWI3D-like isoform X2
TrEMBLA0A2T7CRZ80.0A0A2T7CRZ8_9POAL; Uncharacterized protein
STRINGPavir.J38701.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45421214