PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7KG065100.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 258aa    MW: 28236 Da    PI: 4.9807
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7KG065100.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.71e-1374119555
                          HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          + ++Er RR+++N+++  Lr+++P+      +K++Ka+i + A+eYI++Lq
  Pavir.7KG065100.2.p  74 NIIMERDRRRKLNEKLYALRSVVPNI-----TKMDKASIIKDAIEYIQQLQ 119
                          5689*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.32969118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-1773134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.76E-1373123No hitNo description
PfamPF000102.0E-1174119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-1675133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.6E-1675124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MDPEMGDSYW EETQRYLEYQ ELSIYLEAQE DAMSCYDSSS PDGSNSHSSS APAGDGKGAG  60
SGGAGRAADG ANKNIIMERD RRRKLNEKLY ALRSVVPNIT KMDKASIIKD AIEYIQQLQA  120
EERQVLQEVR ALESAAGVPQ AEECYALGDE GLLPLEAAER TKKPKRARSV PPSVAAPPPP  180
PPVEVLELRV SEVGERVLVV SLTCSKRRDA MARVCRAIEE LRLRVITASI TSVAGCLMHT  240
VFVEVPWKFD RIAPPSY*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.13810.0leaf| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7KG065100.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004975234.11e-124transcription factor bHLH35
TrEMBLK3Y9C01e-123K3Y9C0_SETIT; Uncharacterized protein
STRINGPavir.Ga02256.1.p1e-177(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.22e-36bHLH family protein