PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7KG064900.7.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 289aa    MW: 31251.3 Da    PI: 4.7246
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7KG064900.7.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.51.2e-1389134555
                          HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +  +Er RR+r+N+++  Lr+++P+      +K++Ka+i++ A+ YI +Lq
  Pavir.7KG064900.7.p  89 NIVMERDRRRRLNEKLYALRSVVPNI-----TKMDKASIVRDAIAYIEQLQ 134
                          5679*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.01284133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.2E-1686149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.84E-1587138No hitNo description
PfamPF000102.7E-1189134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.1E-1690149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-1590139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2603.4E-4218275No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MEAADLLSLG FDFYCQSPPR FFDEQDCLAV DDSIVYAPTE AESVTGLYPS YGEREASSSP  60
DGANSCSGQQ VAPPPASPAP AGAATTTKNI VMERDRRRRL NEKLYALRSV VPNITKMDKA  120
SIVRDAIAYI EQLQEEERRV LAEISALESS SGVTAAGVKL KAQDDADSYP WPRKWTRTAP  180
GGSSIDASPP LQILEVQVTE AGEKVAVVSV RCSRGRDAVA KVCRALEPLR LRVVTASIAA  240
AGDAVVHTMF VEIEDKMSGA QLKERVEAAL AQLEVTRCPL KTTRYWED*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7KG064900.7.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3572944e-36AK357294.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1049P14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025823077.11e-170transcription factor bHLH35-like isoform X2
TrEMBLA0A2S3I5H01e-169A0A2S3I5H0_9POAL; Uncharacterized protein
TrEMBLA0A2T7CT191e-169A0A2T7CT19_9POAL; Uncharacterized protein
STRINGPavir.Gb02374.1.p1e-174(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.13e-44bHLH family protein