PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.7KG064900.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 287aa MW: 31024 Da PI: 4.7246 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 42.5 | 1.2e-13 | 89 | 134 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + +Er RR+r+N+++ Lr+++P+ +K++Ka+i++ A+ YI +Lq Pavir.7KG064900.2.p 89 NIVMERDRRRRLNEKLYALRSVVPNI-----TKMDKASIVRDAIAYIEQLQ 134 5679*********************7.....7******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 16.012 | 84 | 133 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.19E-16 | 86 | 149 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.68E-15 | 87 | 138 | No hit | No description |
Pfam | PF00010 | 2.7E-11 | 89 | 134 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 8.0E-16 | 90 | 149 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.1E-15 | 90 | 139 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:3.30.70.260 | 3.5E-4 | 216 | 273 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 287 aa Download sequence Send to blast |
MEAADLLSLG FDFYCQSPPR FFDEQDCLAV DDSIVYAPTE AESVTGLYPS YGEREASSSP 60 DGANSCSGQQ VAPPPASPAP AGAATTTKNI VMERDRRRRL NEKLYALRSV VPNITKMDKA 120 SIVRDAIAYI EQLQEEERRV LAEISALESS SGVTAAGVKL KAQDDADSYP WPRKWTRTAP 180 GGSSIDASPP LQILEVTEAG EKVAVVSVRC SRGRDAVAKV CRALEPLRLR VVTASIAAAG 240 DAVVHTMFVE IEDKMSGAQL KERVEAALAQ LEVTRCPLKT TRYWED* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.7KG064900.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK357294 | 4e-36 | AK357294.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1049P14. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025823077.1 | 1e-167 | transcription factor bHLH35-like isoform X2 | ||||
TrEMBL | A0A2S3I5H0 | 1e-165 | A0A2S3I5H0_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T7CT19 | 1e-165 | A0A2T7CT19_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Gb02374.1.p | 1e-170 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57150.1 | 2e-42 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.7KG064900.2.p |