PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pavir.7KG064000.4.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 315aa MW: 34027.9 Da PI: 9.1325 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.3 | 1.2e-12 | 90 | 133 | 7 | 55 |
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 Er RR+r+N+++ Lr+++P+ +K++Ka+i++ A+ Y+ +Lq Pavir.7KG064000.4.p 90 VTERGRRRRLNEKLYALRSVVPNI-----TKMDKASIVRDAIAYVEHLQ 133 57*********************7.....7******************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.939 | 83 | 132 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 9.42E-16 | 85 | 147 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.0E-14 | 89 | 148 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.5E-15 | 89 | 138 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.3E-10 | 91 | 133 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.78E-13 | 92 | 137 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 315 aa Download sequence Send to blast |
MEADNTMVAM GFGLYWHSPP RFLVEPLDLA DAFGSMYAYA PASEAESLSG LCASYAPADS 60 SSPGGANDCC SAPAVLAPPP PAAVATRNVV TERGRRRRLN EKLYALRSVV PNITKMDKAS 120 IVRDAIAYVE HLQEQERRVL DDIAALQSAA VKTVDVATVG ATDDVDSFFP QMKRMRRAPS 180 IAFADDGAAT RSITTSTPPV RILEVQVSES GKTMAMVSVR CSRGRGAVSR VCRALEPLRL 240 GVVTATIAAA GDTLVHTMVV EVSSLQRQHS YRPAATSKLF CCSIRTTSCR NHIIPSRYNF 300 DSCPRTRRWR TSAR* |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Pvr.1381 | 5e-33 | leaf| stem |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Pavir.7KG064000.4.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | EU961023 | 1e-42 | EU961023.1 Zea mays clone 230521 DNA binding like mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004975230.1 | 1e-112 | transcription factor bHLH35 isoform X1 | ||||
Refseq | XP_004975231.1 | 1e-112 | transcription factor bHLH35 isoform X2 | ||||
TrEMBL | A0A2T7CT28 | 1e-169 | A0A2T7CT28_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ga02257.1.p | 1e-167 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G57150.2 | 7e-23 | bHLH family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pavir.7KG064000.4.p |