PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7KG064000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 315aa    MW: 34027.9 Da    PI: 9.1325
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7KG064000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.31.2e-1290133755
                          HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            Er RR+r+N+++  Lr+++P+      +K++Ka+i++ A+ Y+ +Lq
  Pavir.7KG064000.1.p  90 VTERGRRRRLNEKLYALRSVVPNI-----TKMDKASIVRDAIAYVEHLQ 133
                          57*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.93983132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.42E-1685147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-1489148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-1589138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.3E-1091133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.78E-1392137No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MEADNTMVAM GFGLYWHSPP RFLVEPLDLA DAFGSMYAYA PASEAESLSG LCASYAPADS  60
SSPGGANDCC SAPAVLAPPP PAAVATRNVV TERGRRRRLN EKLYALRSVV PNITKMDKAS  120
IVRDAIAYVE HLQEQERRVL DDIAALQSAA VKTVDVATVG ATDDVDSFFP QMKRMRRAPS  180
IAFADDGAAT RSITTSTPPV RILEVQVSES GKTMAMVSVR CSRGRGAVSR VCRALEPLRL  240
GVVTATIAAA GDTLVHTMVV EVSSLQRQHS YRPAATSKLF CCSIRTTSCR NHIIPSRYNF  300
DSCPRTRRWR TSAR*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.13815e-33leaf| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7KG064000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9610231e-42EU961023.1 Zea mays clone 230521 DNA binding like mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004975230.11e-112transcription factor bHLH35 isoform X1
RefseqXP_004975231.11e-112transcription factor bHLH35 isoform X2
TrEMBLA0A2T7CT281e-169A0A2T7CT28_9POAL; Uncharacterized protein
STRINGPavir.Ga02257.1.p1e-167(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104438133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.27e-23bHLH family protein