PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.7KG062300.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 514aa MW: 59077.2 Da PI: 8.6636

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.7KG062300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	69.5	8.4e-22	63	144	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 ++Yn+YA +vGFsvrks++k++ +g+ +++fvCs eg+r++++++ + +rt+C+a+++ + +k+g+w ++k++leHnH la Pavir.7KG062300.1.p 63 EMYNTYAGQVGFSVRKSRTKHR-LDGSLSSKHFVCSSEGHRKNKSSQ-------KDISRTDCDARVQFSINKEGVWILQKVKLEHNHYLA 144 58*************98876.9999**********998766.......999****************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.3E-18	63	144	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.5E-8	243	291	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.014	439	475	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.3E-6	447	472	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	8.3E-7	450	477	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 514 aa Download sequence Send to blast
MEDPRSPQIV VVGGDGGEEE QPIRQIGSMK NEIPNEEVVD ISGKKLIAPQ VGMSFQSKKK 60 AFEMYNTYAG QVGFSVRKSR TKHRLDGSLS SKHFVCSSEG HRKNKSSQKD ISRTDCDARV 120 QFSINKEGVW ILQKVKLEHN HYLASPDKSH KLRSQREVIE ADTKLIGQIR QAGMKPDQVF 180 DFIKEHYGVE DKVSFSKMDC FNEIGHPTFF YVVQVDKENG RIANFFWADG HSIMDYKCFG 240 DAVSFDTTFQ TNKFEMPFTP ILGTNHHKQT IIFGCIYEDR SEAYFIEKWN ELLAKYSLEN 300 NSWMTNLYAL RAKWAVVYRD SFTANMNSTQ RSEGMNNVFK KRFRRKLGLS ELLVECEKVA 360 TSLRSNELDA DFKSRRKTPV SYIPNPPMLK TAAESYTRRM YSEFEEEFKN QFTLSCQLLQ 420 AAGTTSTFFV KYMESDRGAT VVFNTEDSTI TCSCRMFECI GLLCKHALRV YNMNGVYILP 480 SQYILPRWTK YAKNGFYIPK QGTEEGDLKT QAAL

Sequence ? help Back to Top

Protein Sequence Length: 514 aa Download sequence Send to blast

MEDPRSPQIV VVGGDGGEEE QPIRQIGSMK NEIPNEEVVD ISGKKLIAPQ VGMSFQSKKK  60
AFEMYNTYAG QVGFSVRKSR TKHRLDGSLS SKHFVCSSEG HRKNKSSQKD ISRTDCDARV  120
QFSINKEGVW ILQKVKLEHN HYLASPDKSH KLRSQREVIE ADTKLIGQIR QAGMKPDQVF  180
DFIKEHYGVE DKVSFSKMDC FNEIGHPTFF YVVQVDKENG RIANFFWADG HSIMDYKCFG  240
DAVSFDTTFQ TNKFEMPFTP ILGTNHHKQT IIFGCIYEDR SEAYFIEKWN ELLAKYSLEN  300
NSWMTNLYAL RAKWAVVYRD SFTANMNSTQ RSEGMNNVFK KRFRRKLGLS ELLVECEKVA  360
TSLRSNELDA DFKSRRKTPV SYIPNPPMLK TAAESYTRRM YSEFEEEFKN QFTLSCQLLQ  420
AAGTTSTFFV KYMESDRGAT VVFNTEDSTI TCSCRMFECI GLLCKHALRV YNMNGVYILP  480
SQYILPRWTK YAKNGFYIPK QGTEEGDLKT QAAL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.7KG062300.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006662131.1	1e-164	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A2T8I6E3	1e-151	A0A2T8I6E3_9POAL; Uncharacterized protein
STRING	Sb04g005390.1	1e-165	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-59	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Pavir.7KG062300.1.p