PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7KG056700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 814aa    MW: 94425.1 Da    PI: 6.0223
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7KG056700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR150.85.5e-16218297289
                 FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                          f + Y++ +GF v k +++k+      +k tfvC+k+ k++e++++ +++rr+ a+++t+C+ k++vk+   ++wevt   +eHnH+l
  Pavir.7KG056700.1.p 218 FISVYGQVTGFAVIKGTNYKH------KKITFVCNKSRKARETDTR-QRKRRRDAVEHTQCRMKVTVKLV-ADRWEVTAAMNEHNHPL 297
                          6678***************99......5678***********9999.99*********************.9**************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.6E-13218297IPR004330FAR1 DNA binding domain
PfamPF105517.8E-27422514IPR018289MULE transposase domain
PROSITE profilePS509669.347702738IPR007527Zinc finger, SWIM-type
SMARTSM005752.2E-4713740IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 814 aa     Download sequence    Send to blast
MDLHAVETSK KKMERGAESS PMLPAQTMAE RNLKSYQEMS DANGELGMRQ GNEPANGEPC  60
GLVASAMNKV HETRKEAEEE ADMPMVEMEN TSRGDTDLEE RYGIILAPEH EVREHGNLTS  120
QESLESPVFL WNDTEMNRQS EIQVLGAGET FVQELGQENG NVVLNEGDED LNECQKDQAD  180
AEADGDEDYM FPSPEEMEKA RPPEVGMVFS TLQDAHRFIS VYGQVTGFAV IKGTNYKHKK  240
ITFVCNKSRK ARETDTRQRK RRRDAVEHTQ CRMKVTVKLV ADRWEVTAAM NEHNHPLWCS  300
PLLTRFFMSH KDMSDEERHF SRILQESRIK PAKIMEIFRK LQGRFKNVPV RKVDVNSLKQ  360
SGRLMKARNT DIGSTLEHVR RLQKEQPGFY YALRTDEDST IRSIFWTDAR ARLGYALYGD  420
FIHFNTTYRT NAHHMPFASL IGINGHGKPT VFGWALLEND EAETFSWLFR TFLDVMDGKK  480
PSIVITHQDS AILKSIAEVF PAVFHRFSMW HVVREAAAEV GGFMVNRPGM EAELTRLITN  540
SLTTEEFENG WKGMLEKYTA ELNEHLKHMY WTRSMWVPVY FKHVFCPFMR SFGHCESTYS  600
IFQDYVLQED TIETFISQYN IFQYEAVSID RFESTLQKPI YCTRQLIERR AAEIYTMGLF  660
LKFQKELLDA SAFNVFEKEK DTLYTVQRVV DYEDAEFPND SFTIEVDMKI KTFNCICSKF  720
ERDGILCCHV LRLFTQFGIN EIPEHYIKQR WTKKFREQEL QKLCIEKTQN SLRYAMLMNR  780
MAETCASVSK DPSQSQIFLE ELERIQQKMS SRA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1258262RKRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7KG056700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004975158.10.0protein FAR1-RELATED SEQUENCE 9 isoform X2
TrEMBLA0A2T7CSB80.0A0A2T7CSB8_9POAL; Uncharacterized protein
STRINGPavir.Ga02636.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G15090.12e-79FAR1 family protein