PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.7KG012300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | B3 | ||||||||
Protein Properties | Length: 130aa MW: 13221.1 Da PI: 8.7791 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 43.4 | 6.2e-14 | 45 | 108 | 31 | 99 |
.--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 31 eesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 +++ t l ++ g++W+v++ + +++ +l++GW eF a+g+ +g fvv+++ g ++ l++k+f++ Pavir.7KG012300.1.p 45 PGP-TALLVSPFGKVWRVEV--GRDGDGAFLGRGWAEFLAAHGVGVGWFVVLRHAG--RGALTFKAFDT 108 444.88999***********..999999*************************876..55569999986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01019 | 7.8E-5 | 14 | 109 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.6E-12 | 44 | 110 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 2.0E-11 | 46 | 108 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.53E-13 | 46 | 111 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 9.643 | 51 | 109 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.14E-8 | 51 | 107 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 130 aa Download sequence Send to blast |
MASSPSAAGA AAKQLKALLP PSLRKLRISD ELAGCFDAGG GGGAPGPTAL LVSPFGKVWR 60 VEVGRDGDGA FLGRGWAEFL AAHGVGVGWF VVLRHAGRGA LTFKAFDTSF CIKEFAAPAA 120 GEHAFSYES* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.7KG012300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025825231.1 | 4e-65 | putative B3 domain-containing protein Os04g0347400 | ||||
Swissprot | Q7XS75 | 8e-30 | Y4469_ORYSJ; Putative B3 domain-containing protein Os04g0346900 | ||||
TrEMBL | A0A2T8IBP3 | 2e-71 | A0A2T8IBP3_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J00273.1.p | 2e-62 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP425 | 35 | 187 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.7KG012300.1.p |