PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7KG011600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 430aa    MW: 42987.9 Da    PI: 6.3847
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7KG011600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.41.4e-09259306455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +h+ +Er RR+ri +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Pavir.7KG011600.1.p 259 SHSLAERVRRERISERMKMLQSLVPGS----NKITGKALMLDEIINYVQSLQ 306
                          8*************************9....899*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.96E-16253323IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.15E-11253310No hitNo description
Gene3DG3DSA:4.10.280.104.4E-16255324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.389255305IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.6E-7259306IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-10261311IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MADEHFFPGP GDFPSGLGAA PFFGASYSYA PPAGAGLLEL DAAAMQAFGL AWADLQLPDS  60
SMHFDSALSS LVSSPAHNGG GGGDDVAIGD LIGRLGSICG GGAAASASNS CYSTPLSSPP  120
RGAAAPSPAF RGCCGYPAGA AALEAPAGGS RLSRVASSKS LGAGAATPAS GSPDEAEASR  180
PETGPPVGSG SAGTRDPPAP PAKKRKASAG KGKVASSAKV VGGCGAEGKA GADADAAAEK  240
EPAKDYIHVR ARRGQATDSH SLAERVRRER ISERMKMLQS LVPGSNKITG KALMLDEIIN  300
YVQSLQRQVE FLSMKLATMN PELDAEARYQ AAAAMLAPPP AAFPSSYAAA ADPSAQLVDS  360
CAGAGAFRPA CWAAHQGDDL HSAAACHDYG HGLHASLPAC DLHSAAACHD YGHGLHASLP  420
ACDSFLDGK*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7KG011600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825248.11e-171transcription factor bHLH62-like
SwissprotQ9SRT22e-60BH062_ARATH; Transcription factor bHLH62
TrEMBLA0A3L6PRR81e-179A0A3L6PRR8_PANMI; Transcription factor bHLH78-like
STRINGPavir.J21235.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125472835
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.26e-42bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]