PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.7KG006800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB | ||||||||
Protein Properties | Length: 982aa MW: 110200 Da PI: 4.9446 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43.1 | 9.9e-14 | 8 | 53 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g W Ede+l+ av ++G+++W++I++ + ++++kqck rw+ +l Pavir.7KG006800.1.p 8 GVWKNTEDEILKAAVMKYGKNQWARISSLLV-RKSAKQCKARWYEWL 53 78*****************************.************986 PP | |||||||
2 | Myb_DNA-binding | 32.8 | 1.6e-10 | 60 | 103 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT eEde+l+++ k++++ W+tIa +g Rt+ qc +r+ k+l Pavir.7KG006800.1.p 60 TEWTREEDEKLLHLAKLMPTQ-WRTIAPIVG--RTPSQCLERYEKLL 103 68*****************99.********8..**********9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 22.008 | 2 | 57 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.7E-18 | 5 | 56 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.0E-15 | 6 | 55 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.41E-12 | 10 | 53 | No hit | No description |
Pfam | PF13921 | 4.6E-13 | 10 | 70 | No hit | No description |
SuperFamily | SSF46689 | 6.47E-21 | 33 | 108 | IPR009057 | Homeodomain-like |
CDD | cd11659 | 1.35E-30 | 55 | 106 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.4E-14 | 57 | 104 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.443 | 58 | 107 | IPR017930 | Myb domain |
SMART | SM00717 | 1.7E-12 | 58 | 105 | IPR001005 | SANT/Myb domain |
Pfam | PF11831 | 1.9E-59 | 406 | 658 | IPR021786 | Pre-mRNA splicing factor component Cdc5p/Cef1 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009870 | Biological Process | defense response signaling pathway, resistance gene-dependent | ||||
GO:0010204 | Biological Process | defense response signaling pathway, resistance gene-independent | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0009507 | Cellular Component | chloroplast | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 982 aa Download sequence Send to blast |
MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT 60 EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPSQCLERYE KLLDAACAKD ENYEPNDDPR 120 KLRPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR 180 LASLQKRREL KAAGIDTRQR KRKRKGIDYN AEIPFEKRPP PGFYDTVGED KPPEHVQFPT 240 TIQDLEGKRR VDIEAQLRKQ DIARNKILQR QDAPAAIMQA NKLNDPEAVT RRSKLMLPPP 300 QISDHELEEI AKMGSAGDPA LADELGEGST ATRALLSSYS QTPRLGMTPL RTPQRTPAGK 360 GDAIMMEAEN LARLRESQTP LLGGDNPDLH PSDFSGVTPR KKEIQTPNPM ATPLALASPG 420 PGVTPRVGMT PSRDGNSFGI TPKATPFRDE LRINEEVELQ DSAKLELRRQ AELRKSLRSG 480 FASIPQPKNE YQIVMPPITE DEKEEAEERI EEDMSDRLAR ERAEEQARQE ALLRKRSKVL 540 QRSLPRPPAA SVEILRQSLI RGGESRSRST FVPPTSLEQA DDLINEELLR LLEHDNAKYP 600 LDEKTQKEKK KGNKRQANAA AVPEIEDFDE GELKEASSLV QEEIQYLRVA MGHENESFED 660 FVKAHDACQE DLMYFPTNNS YGLASIAGNA DKISALQNEF EIVKKRMDEE AKKASRLEQK 720 IKLLTQGYQV RAGKLWLQVQ DTSKQMDTAA TELECFQELQ KQEQLAASYR VRNLTAEVNK 780 QKALERTLQS RYGDLMSVYH RIQEQLEEHK IQIRKQEAIE AENRAGEEAA AQNRAAEEEN 840 ESVEMGKEHM NSITDEEPAP AGSKQINEDQ MDVDNTNVDG EFVGPIPPAP DTQGDVVEAS 900 VQENSSNAPS TNGVTTNGEA CDMVDASNVE SQDNTSGSLL VDAGNQEDGK NSIPLVGASE 960 RNTALSSDDA VTNEQNDMVP E* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5mqf_L | 0.0 | 2 | 796 | 3 | 792 | Cell division cycle 5-like protein |
5xjc_L | 0.0 | 2 | 796 | 3 | 792 | Cell division cycle 5-like protein |
5yzg_L | 0.0 | 2 | 796 | 3 | 792 | Cell division cycle 5-like protein |
5z56_L | 0.0 | 2 | 796 | 3 | 792 | Cell division cycle 5-like protein |
5z57_L | 0.0 | 2 | 796 | 3 | 792 | Cell division cycle 5-like protein |
5z58_L | 0.0 | 2 | 796 | 3 | 792 | Cell division cycle 5-like protein |
6ff4_L | 0.0 | 2 | 796 | 3 | 792 | Cell division cycle 5-like protein |
6ff7_L | 0.0 | 2 | 796 | 3 | 792 | Cell division cycle 5-like protein |
6icz_L | 0.0 | 2 | 796 | 3 | 792 | Cell division cycle 5-like protein |
6id0_L | 0.0 | 2 | 796 | 3 | 792 | Cell division cycle 5-like protein |
6id1_L | 0.0 | 2 | 796 | 3 | 792 | Cell division cycle 5-like protein |
6qdv_O | 0.0 | 2 | 796 | 3 | 792 | Cell division cycle 5-like protein |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 185 | 204 | KRRELKAAGIDTRQRKRKRK |
2 | 199 | 204 | RKRKRK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.7620 | 0.0 | callus| leaf| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed extensively in shoot and root meristems. {ECO:0000269|PubMed:8917598}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250|UniProtKB:Q99459, ECO:0000269|PubMed:17298883, ECO:0000269|PubMed:17575050, ECO:0000269|PubMed:8917598}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00028 | SELEX | Transfer from AT1G09770 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.7KG006800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025823518.1 | 0.0 | cell division cycle 5-like protein | ||||
Swissprot | P92948 | 0.0 | CDC5L_ARATH; Cell division cycle 5-like protein | ||||
TrEMBL | A0A3L6QAN4 | 0.0 | A0A3L6QAN4_PANMI; Cell division cycle 5-like protein | ||||
STRING | Pavir.Ga02351.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4416 | 35 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09770.1 | 0.0 | cell division cycle 5 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.7KG006800.1.p |
Publications ? help Back to Top | |||
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