PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.7KG006000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 248aa MW: 27180.8 Da PI: 10.0431 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 34.7 | 3.1e-11 | 114 | 162 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h +rEr RR+r+ ++f+ L llP++ s K K +i+ Av YI++L+ Pavir.7KG006000.1.p 114 RHIMRERLRRERLSQGFADLHALLPPS---ASSKGGKNDIVGTAVGYIRELE 162 599***********************9...8******************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 13.256 | 110 | 161 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 8.77E-15 | 110 | 180 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.9E-10 | 110 | 182 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.6E-8 | 114 | 162 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.6E-6 | 116 | 167 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MADPFFYLGQ DSADEKYLMS LGLVLPPEPP AGSAFEAYQR RPTLLESRLM MMGRECRRHN 60 NSGGGENVHR RMFGYYLRRI ARRDDAAAGA AHSAPADNEA AVVPLPPHSS SRFRHIMRER 120 LRRERLSQGF ADLHALLPPS ASSKGGKNDI VGTAVGYIRE LEGRRGWLRA RNQELLERAA 180 SSRARSGGAG AARNAAGGDM VVKVRDESED FSAQLLTACE AGYHMMSHMC RTSSQTSFVL 240 PAKPLHS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 119 | 124 | RLRRER |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.7KG006000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU948863 | 4e-54 | EU948863.1 Zea mays clone 388069 mRNA sequence. | |||
GenBank | KJ728030 | 4e-54 | KJ728030.1 Zea mays clone pUT6169 bHLH transcription factor (bHLH79) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025818224.1 | 1e-76 | transcription factor BHLH148-like | ||||
TrEMBL | A0A2S3HR71 | 3e-75 | A0A2S3HR71_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J40740.1.p | 1e-118 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12730 | 24 | 32 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.7KG006000.1.p |