PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.6NG364400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | LBD | ||||||||
Protein Properties | Length: 214aa MW: 23692.5 Da PI: 5.839 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 118.3 | 4.4e-37 | 16 | 116 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +C aCk+lrrkC+k+Cv+apyf+++q +++fa++hk+FGasn +kll +lp ++r + + ++ yeA+ar++dP+yG+v++i++lqqq+ + Pavir.6NG364400.1.p 16 PCGACKFLRRKCVKGCVFAPYFCHQQgAAHFAAIHKVFGASNASKLLMHLPISDRCESAVTMSYEAQARLQDPIYGCVAHIFSLQQQVVS 105 7************************989************************************************************** PP DUF260 90 lkaelallkee 100 l+ael++ +++ Pavir.6NG364400.1.p 106 LQAELESFNAQ 116 *****988766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 21.27 | 15 | 117 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 4.8E-35 | 16 | 113 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010311 | Biological Process | lateral root formation | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MAPWLIAYTS SSLGSPCGAC KFLRRKCVKG CVFAPYFCHQ QGAAHFAAIH KVFGASNASK 60 LLMHLPISDR CESAVTMSYE AQARLQDPIY GCVAHIFSLQ QQVVSLQAEL ESFNAQATQG 120 YKDGSLTSNP QKESCQRLTP YMQDGQLFFH QTIASNSSVK SESQLYFAND CFNSESTQYS 180 EGYEPDLCMP DYNNSNTYCN MQGIGYHDMD DLQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 6e-35 | 7 | 130 | 2 | 123 | LOB family transfactor Ramosa2.1 |
5ly0_B | 6e-35 | 7 | 130 | 2 | 123 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots. {ECO:0000269|PubMed:12068116}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in lateral root formation. Regulated by the transcriptional activators ARF7 and ARF19. {ECO:0000269|PubMed:17259263}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.6NG364400.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:15659631, ECO:0000269|PubMed:17259263}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JN672670 | 5e-90 | JN672670.1 Eragrostis tef bio-material GRIN PI524434 clone Tefdw3b, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025820157.1 | 1e-138 | LOB domain-containing protein 29-like | ||||
Swissprot | Q9M2J7 | 2e-64 | LBD29_ARATH; LOB domain-containing protein 29 | ||||
TrEMBL | A0A3L6PLU0 | 1e-141 | A0A3L6PLU0_PANMI; LOB domain-containing protein 29-like | ||||
STRING | Pavir.Fa00011.1.p | 1e-140 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2501 | 38 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58190.1 | 9e-67 | lateral organ boundaries-domain 29 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.6NG364400.1.p |
Publications ? help Back to Top | |||
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