PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.6NG352900.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB_related | ||||||||
Protein Properties | Length: 237aa MW: 25873.8 Da PI: 6.5294 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 31.1 | 5.3e-10 | 63 | 86 | 22 | 47 |
T-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 22 gtWktIartmgkgRtlkqcksrwqky 47 g W++Ia++++ gRt++++k++w+++ Pavir.6NG352900.2.p 63 G-WSKIAAKLP-GRTDNEIKNHWNTH 86 5.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 9.361 | 44 | 91 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.25E-8 | 62 | 96 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.3E-7 | 63 | 86 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.27E-7 | 64 | 87 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.3E-13 | 64 | 104 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MGPTRSLPRR PVALRASPSW AAGATDGGEG VGRVRAVGRV PLPRPRRVRG SRPSPRRVVS 60 VTGWSKIAAK LPGRTDNEIK NHWNTHIKKK LIKMGIDPAT HQPLANSKAS TSQSTDTAES 120 TKSSDTRDEQ GVKEGSRRDM ALPTDSSEQS SWVESGNDGS GQDQEQLVNW LPETDLPMDE 180 PWLNFMSTNH DALGIVEEPL PWDGATDWLL DYQYFGMCSL NLIDNSTLPS LDGSNF* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.16395 | 0.0 | stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.6NG352900.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK069869 | 2e-46 | AK069869.1 Oryza sativa Japonica Group cDNA clone:J023038A16, full insert sequence. | |||
GenBank | AP004704 | 2e-46 | AP004704.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0544G09. | |||
GenBank | AP006265 | 2e-46 | AP006265.2 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OJ1112_E06. | |||
GenBank | AP014964 | 2e-46 | AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012616 | 2e-46 | CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025820510.1 | 1e-108 | protein ODORANT1-like | ||||
Refseq | XP_025820511.1 | 1e-108 | protein ODORANT1-like | ||||
Refseq | XP_025820512.1 | 1e-108 | protein ODORANT1-like | ||||
Refseq | XP_025820514.1 | 1e-108 | protein ODORANT1-like | ||||
Refseq | XP_025820515.1 | 1e-108 | protein ODORANT1-like | ||||
Refseq | XP_025820516.1 | 1e-108 | protein ODORANT1-like | ||||
Refseq | XP_025820517.1 | 1e-108 | protein ODORANT1-like | ||||
Refseq | XP_025820518.1 | 1e-108 | protein ODORANT1-like | ||||
Refseq | XP_025820519.1 | 1e-108 | protein ODORANT1-like | ||||
Refseq | XP_025820520.1 | 1e-108 | protein ODORANT1-like | ||||
Refseq | XP_025820521.1 | 1e-108 | protein ODORANT1-like | ||||
Refseq | XP_025820522.1 | 1e-108 | protein ODORANT1-like | ||||
Refseq | XP_025820523.1 | 1e-108 | protein ODORANT1-like | ||||
TrEMBL | A0A2T7DAG8 | 1e-107 | A0A2T7DAG8_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Fb02321.1.p | 1e-114 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G12350.1 | 3e-22 | myb domain protein 42 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.6NG352900.2.p |