PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pavir.6NG347500.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 169aa MW: 19225.8 Da PI: 6.7694 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.1 | 1.5e-16 | 2 | 48 | 5 | 48 |
-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 5 TteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqkyl 48 +++E+ l++++++q+G++ +W++Iar+++ gRt++++k++w++++ Pavir.6NG347500.2.p 2 SPQEERLIIELHAQWGNRfdpkRWSRIARRLP-GRTDNEIKNYWRTHM 48 89******************************.************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 22.038 | 1 | 52 | IPR017930 | Myb domain |
CDD | cd00167 | 5.26E-12 | 1 | 48 | No hit | No description |
SMART | SM00717 | 3.8E-11 | 1 | 50 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.64E-12 | 2 | 56 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.8E-19 | 2 | 49 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.4E-14 | 2 | 47 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 169 aa Download sequence Send to blast |
MSPQEERLII ELHAQWGNRF DPKRWSRIAR RLPGRTDNEI KNYWRTHMRK KAQERKMSIS 60 PSSSSSSLTY QSCLLDNSSI IGMGSGDTHN GSTCVSSTLE STQSSMDAYP MDQIWREIEA 120 PALLGTAEGK EKTCSSIPCT LPSPAMWDYK FPEIFWKMED EEIRMLAL* |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Pvr.24640 | 0.0 | leaf| root |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Pavir.6NG347500.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | EU652463 | 1e-119 | EU652463.1 Saccharum officinarum MYB protein (MYBAS1) mRNA, complete cds, alternatively spliced. | |||
GenBank | EU670236 | 1e-119 | EU670236.1 Saccharum officinarum MYB transcription factor MYBAS1 (MYBAS1) mRNA, complete cds, alternatively spliced. | |||
GenBank | HM136779 | 1e-119 | HM136779.1 Saccharum hybrid cultivar Co 740 MYB transcription factor (MYBAS1) gene, complete cds, alternatively spliced. | |||
GenBank | HM136780 | 1e-119 | HM136780.1 Saccharum hybrid cultivar Co 740 MYB transcription factor variant 1 (MYBAS1) mRNA, complete cds, alternatively spliced. | |||
GenBank | HM136781 | 1e-119 | HM136781.1 Saccharum hybrid cultivar Co 740 MYB transcription factor variant 2 (MYBAS1) mRNA, complete cds. | |||
GenBank | HM136782 | 1e-119 | HM136782.1 Saccharum hybrid cultivar Co 740 MYB transcription factor variant 3 (MYBAS1) mRNA, complete cds, alternatively spliced. | |||
GenBank | KM387409 | 1e-119 | KM387409.1 Saccharum officinarum cultivar Badila R2R3-MYB transcription factor variant 1 gene, complete cds, alternatively spliced. | |||
GenBank | KM387410 | 1e-119 | KM387410.1 Saccharum officinarum cultivar Badila R2R3-MYB transcription factor variant 1 mRNA, complete cds, alternatively spliced. | |||
GenBank | KM387411 | 1e-119 | KM387411.1 Saccharum officinarum cultivar Badila R2R3-MYB transcription factor variant 2 mRNA, complete cds, alternatively spliced. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004980031.1 | 8e-96 | myb-related protein MYBAS1 | ||||
Swissprot | Q53NK6 | 1e-71 | MYBA1_ORYSJ; Myb-related protein MYBAS1 | ||||
TrEMBL | A0A3L6RGN4 | 2e-97 | A0A3L6RGN4_PANMI; Myb-related protein MYBAS1-like | ||||
STRING | Pavir.J08441.1.p | 1e-107 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G46130.2 | 2e-30 | myb domain protein 48 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pavir.6NG347500.2.p |
Publications ? help Back to Top | |||
---|---|---|---|
|