PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.6NG347500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB | ||||||||
Protein Properties | Length: 229aa MW: 26310 Da PI: 8.3721 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.4 | 2.9e-17 | 10 | 57 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed +lv+ v+++G ++W+ Ia+ g++Rt+k+c++rw +yl Pavir.6NG347500.1.p 10 KGPWTEQEDMQLVCTVRLFGDRRWDFIAQVSGLNRTGKSCRLRWVNYL 57 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 56.8 | 5e-18 | 64 | 108 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 gr++++E+ l++++++q+G++ W++Iar+++ gRt++++k++w++++ Pavir.6NG347500.1.p 64 GRMSPQEERLIIELHAQWGNR-WSRIARRLP-GRTDNEIKNYWRTHM 108 89*******************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.735 | 5 | 57 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.01E-29 | 8 | 104 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-14 | 9 | 59 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.6E-16 | 10 | 57 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.8E-20 | 11 | 64 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.21E-10 | 12 | 57 | No hit | No description |
PROSITE profile | PS51294 | 26.528 | 58 | 112 | IPR017930 | Myb domain |
SMART | SM00717 | 5.8E-17 | 62 | 110 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.7E-16 | 64 | 107 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.4E-24 | 65 | 111 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.39E-12 | 65 | 108 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MVTVREEMRK GPWTEQEDMQ LVCTVRLFGD RRWDFIAQVS GLNRTGKSCR LRWVNYLHPG 60 LKHGRMSPQE ERLIIELHAQ WGNRWSRIAR RLPGRTDNEI KNYWRTHMRK KAQERKMSIS 120 PSSSSSSLTY QSCLLDNSSI IGMGSGDTHN GSTCVSSTLE STQSSMDAYP MDQIWREIEA 180 PALLGTAEGK EKTCSSIPCT LPSPAMWDYK FPEIFWKMED EEIRMLAL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 1e-27 | 7 | 112 | 1 | 105 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.24640 | 0.0 | leaf| root |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.6NG347500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM387410 | 0.0 | KM387410.1 Saccharum officinarum cultivar Badila R2R3-MYB transcription factor variant 1 mRNA, complete cds, alternatively spliced. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004980031.1 | 1e-151 | myb-related protein MYBAS1 | ||||
Swissprot | Q53NK6 | 1e-125 | MYBA1_ORYSJ; Myb-related protein MYBAS1 | ||||
TrEMBL | A0A3L6RGN4 | 1e-152 | A0A3L6RGN4_PANMI; Myb-related protein MYBAS1-like | ||||
STRING | Pavir.J08441.1.p | 1e-170 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP636 | 37 | 169 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59780.3 | 7e-74 | myb domain protein 59 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.6NG347500.1.p |
Publications ? help Back to Top | |||
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