PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pavir.6NG345300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 233aa MW: 24409 Da PI: 4.8729 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.1 | 1e-18 | 45 | 97 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 + ++GVr++ + grWv+e+r+p g + r ++g+f+tae Aa+a++aa+++l g Pavir.6NG345300.1.p 45 PVFRGVRRRGRAGRWVCEVRVP---GsRGDRLWVGTFDTAEAAARAHDAAMLALCG 97 579******************9...5445***********************9976 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 7.9E-14 | 45 | 97 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.4E-27 | 46 | 107 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.705 | 46 | 105 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.45E-18 | 46 | 107 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 2.4E-20 | 46 | 111 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.9E-5 | 47 | 58 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.9E-5 | 71 | 87 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 233 aa Download sequence Send to blast |
MEHVKSATQE PPPEEESGRA GESRSRPSPP KRPAGRTKFQ ETRHPVFRGV RRRGRAGRWV 60 CEVRVPGSRG DRLWVGTFDT AEAAARAHDA AMLALCGADA SLNFADSAWL LHVPRAVSAA 120 AELPPLADVQ RAATEAVAGF LRRHGGDAPA VDAAPQHNAA SSSSTPAVEA PPAARSALDN 180 GSLLELDVFG GMDAGSYYAS LAQGLLIDPP PTAADCPEDD EDCDAGEVEL WS* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Pavir.6NG345300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | EU958227 | 1e-130 | EU958227.1 Zea mays clone 1679636 dehydration-responsive element-binding protein 1B mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025820831.1 | 1e-108 | dehydration-responsive element-binding protein 1J-like | ||||
Swissprot | Q0J3Y7 | 4e-68 | DRE1J_ORYSJ; Dehydration-responsive element-binding protein 1J | ||||
TrEMBL | A0A2T7DA99 | 1e-116 | A0A2T7DA99_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J32829.1.p | 1e-133 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP196 | 36 | 261 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G25470.1 | 1e-18 | C-repeat/DRE binding factor 2 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pavir.6NG345300.1.p |