PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.6NG343900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 199aa MW: 21447.4 Da PI: 12.6339 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 12.9 | 0.0002 | 45 | 60 | 3 | 18 |
HHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNs 18 ++h e+Er+RRd++N Pavir.6NG343900.1.p 45 MTHVEVERQRRDKLNR 60 69*************6 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence Send to blast |
MPILTANRTT ACWTMAPCWK IGATSPRGPR ATKNNPGPRS NGTTMTHVEV ERQRRDKLNR 60 LSSASSGPPC PPCRGWTRRP SWPTRPPTSP SCTAALTSSR PRTSLPRRRP PHPGEPGGAN 120 GRERGGGAAP DDRGAPCPRK LHARSPLAGS ARAARERVPR RRHDRAGRRR GRGRRRAAGR 180 ARPPRSIVTP AAADRLAS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.6NG343900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Link Out ? help Back to Top | |
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Phytozome | Pavir.6NG343900.1.p |