PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.6NG343600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 257aa MW: 27456.1 Da PI: 5.9585 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 26.9 | 8.7e-09 | 97 | 142 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er Rd++ +f eLr +P+ +++Ka+ L A YI +L Pavir.6NG343600.1.p 97 THVEAERLQRDKLHRRFCELRAAVPTV-----SRMDKASLLFDAATYIAQL 142 799***********************6.....4****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.995 | 93 | 142 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.12E-8 | 96 | 147 | No hit | No description |
SuperFamily | SSF47459 | 1.57E-13 | 96 | 160 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 8.6E-12 | 97 | 155 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.1E-6 | 97 | 142 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.3E-6 | 99 | 148 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MDEMVCPASS GSSPSPATFF STTGQHQELE FMPCDVLLEG WLEDDDSMDG PPDGISCGDE 60 GSRSPGNDVL LSGEPPAPAP KRRGRKPGPR SNGPALTHVE AERLQRDKLH RRFCELRAAV 120 PTVSRMDKAS LLFDAATYIA QLRSRVKQLE SENRLAAAAA AATPVAATYS VGVQENLEVR 180 MVGRDAAALR LTTAARHAPA RFMLALQWLD LPVQHASVCL VGGMTVQDAV VDVPAAALRD 240 ERALRAALLH QLQQTG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 7e-16 | 96 | 152 | 7 | 63 | Transcription factor MYC2 |
5gnj_B | 7e-16 | 96 | 152 | 7 | 63 | Transcription factor MYC2 |
5gnj_E | 7e-16 | 96 | 152 | 7 | 63 | Transcription factor MYC2 |
5gnj_F | 7e-16 | 96 | 152 | 7 | 63 | Transcription factor MYC2 |
5gnj_G | 7e-16 | 96 | 152 | 7 | 63 | Transcription factor MYC2 |
5gnj_I | 7e-16 | 96 | 152 | 7 | 63 | Transcription factor MYC2 |
5gnj_M | 7e-16 | 96 | 152 | 7 | 63 | Transcription factor MYC2 |
5gnj_N | 7e-16 | 96 | 152 | 7 | 63 | Transcription factor MYC2 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.6NG343600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025822542.1 | 1e-121 | transcription factor MYC3-like | ||||
TrEMBL | A0A3L6RG36 | 1e-121 | A0A3L6RG36_PANMI; Transcription factor MYC2-like | ||||
STRING | Pavir.Fb02348.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP893 | 33 | 130 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17880.1 | 4e-19 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.6NG343600.1.p |