PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.6NG338700.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bZIP

Protein Properties

Length: 367aa MW: 39019.9 Da PI: 6.1842

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.6NG338700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	26.9	1.1e-08	186	244	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 k+++r + NR +A rs +RK +i eLe+kv+ ++ e +aL+ +l l+ a l++e+ Pavir.6NG338700.1.p 186 KKAKRIINNRQSAARSKERKMRYISELERKVQFMQREATALATQLALLQRDTAGLTAEN 244 89**********************************************99999988887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51257	5	1	16	No hit	No description
SMART	SM00338	1.0E-14	182	246	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.703	184	247	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	7.3E-8	184	240	No hit	No description
Pfam	PF00170	1.6E-7	186	235	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.45E-10	186	240	No hit	No description
CDD	cd14703	8.69E-22	187	238	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 367 aa Download sequence Send to blast
MDMDKTPIPG GGGGGCAGNV PAMQSSCDAV AASPAPHTEC DISRMPDSPM RKPGHRRALS 60 DIIGLPEDLD LGAPGAGDGL ALSDENEEEL FSMFLDVEKL NSRCGASESE SSCAMAAVGG 120 EATQTSSAPG AGLRPKHHQR HSMDASSSID TENLFGTSAM EGVSPAEAKK AMSAAKLAEL 180 ALIDPKKAKR IINNRQSAAR SKERKMRYIS ELERKVQFMQ REATALATQL ALLQRDTAGL 240 TAENSELKIR LQNTEQQVHL QDALNEALKS ELQRLKMATG QMGTSGGGAM NLGTSPHPFA 300 LSQQVFHPNQ AMPPSLAMQQ QHPNQPLHPL QTQQLQQAAL NLNMKGPAPA PNQWQWGDAW 360 SESSSS*

Sequence ? help Back to Top

Protein Sequence Length: 367 aa Download sequence Send to blast

MDMDKTPIPG GGGGGCAGNV PAMQSSCDAV AASPAPHTEC DISRMPDSPM RKPGHRRALS  60
DIIGLPEDLD LGAPGAGDGL ALSDENEEEL FSMFLDVEKL NSRCGASESE SSCAMAAVGG  120
EATQTSSAPG AGLRPKHHQR HSMDASSSID TENLFGTSAM EGVSPAEAKK AMSAAKLAEL  180
ALIDPKKAKR IINNRQSAAR SKERKMRYIS ELERKVQFMQ REATALATQL ALLQRDTAGL  240
TAENSELKIR LQNTEQQVHL QDALNEALKS ELQRLKMATG QMGTSGGGAM NLGTSPHPFA  300
LSQQVFHPNQ AMPPSLAMQQ QHPNQPLHPL QTQQLQQAAL NLNMKGPAPA PNQWQWGDAW  360
SESSSS*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed at high levels in levels in leaf sheath, moderate levels in leaf blade, but not in roots. Predominantly expressed in vascular tissues. {ECO:0000269\|PubMed:14704272, ECO:0000269\|PubMed:9311985}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269\|PubMed:11390974, ECO:0000269\|PubMed:12855676, ECO:0000269\|PubMed:14704272, ECO:0000269\|PubMed:9311985}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.6NG338700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT035985	0.0	BT035985.1 Zea mays full-length cDNA clone ZM_BFb0090M08 mRNA, complete cds.
GenBank	JX469928	0.0	JX469928.1 Zea mays subsp. mays clone UT3186 bZIP-type transcription factor mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025822526.1	0.0	transcription factor RF2a-like
Swissprot	Q69IL4	1e-111	RF2A_ORYSJ; Transcription factor RF2a
TrEMBL	A0A2S3I4C0	0.0	A0A2S3I4C0_9POAL; Uncharacterized protein
STRING	Pavir.Fa00247.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4269	38	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06070.1	1e-69	bZIP family protein

Link Out ? help Back to Top
Phytozome	Pavir.6NG338700.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Dai S,Zhang Z,Bick J,Beachy RN Essential role of the Box II cis element and cognate host factors in regulating the promoter of Rice tungro bacilliform virus. J. Gen. Virol., 2006. 87(Pt 3): p. 715-22 [PMID:16476995] Liu Y,Dai S,Beachy RN Role of the C-terminal domains of rice (Oryza sativa L.) bZIP proteins RF2a and RF2b in regulating transcription. Biochem. J., 2007. 405(2): p. 243-9 [PMID:17371296] Dai S, et al. Transgenic rice plants that overexpress transcription factors RF2a and RF2b are tolerant to rice tungro virus replication and disease. Proc. Natl. Acad. Sci. U.S.A., 2008. 105(52): p. 21012-6 [PMID:19104064] Ordiz MI,Yang J,Barbazuk WB,Beachy RN Functional analysis of the activation domain of RF2a, a rice transcription factor. Plant Biotechnol. J., 2010. 8(7): p. 835-44 [PMID:20408988]