PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.6NG334600.2.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

NAC

Protein Properties

Length: 376aa MW: 43888.2 Da PI: 7.6075

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.6NG334600.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	34.6	5.6e-11	73	201	11	127
NAM 11 deelvveyLkkkvegkk....leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra.........tksgyWkatg 87 d e++ ++L+ +++ + e+ + d+++++P dL k++++ + wy ++ ++++++g ++ + +W++t Pavir.6NG334600.2.p 73 DREML-HHLRTALDNPYeqqkMMDEKLNCQEDLTQLNPYDLI-KLTTGGTPWYVTTSFNRQTREGMWVEKNeefvairmeQPQKMWHETS 160 66766.67776665543332222223344569*******7.778899999999999998886666545666665555899**** PP NAM 88 kdkevlskkgel....vglkktLvfykgrapkgektdWvmheyr 127 + v +++ + g+++tL f +++g+ktdW+mhey+ Pavir.6NG334600.2.p 161 AVQMVDLSQKPVtpeyPGVRRTLEFR---NQDGRKTDWFMHEYQ 201 9999886333245559*****6...89999*******7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00614	0.14	18	65	IPR003656	Zinc finger, BED-type
PROSITE profile	PS51005	11.728	62	232	IPR003441	NAC domain
Pfam	PF02365	5.2E-8	87	201	IPR003441	NAC domain
SuperFamily	SSF101941	1.83E-9	96	230	IPR003441	NAC domain
SMART	SM00614	0.024	295	348	IPR003656	Zinc finger, BED-type
PROSITE profile	PS50808	9.431	295	352	IPR003656	Zinc finger, BED-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 376 aa Download sequence Send to blast
MQTRTTADPD EREDNVREHF TKFCSATDPD EVYAACRRCD KVLKAHPEKH GTSHLIGHIH 60 TCSSCTNPST DEDREMLHHL RTALDNPYEQ QKMMDEKLNC QEDLTQLNPY DLIKLTTGGT 120 PWYVTTSFNR QTREGMWVEK NEEFVAIRME QPQKMWHETS AVQMVDLSQK PVTPEYPGVR 180 RTLEFRNQDG RKTDWFMHEY QRIMLQYQQV DDNKSPALLL QGGMVIRKVF RYNKDAFLST 240 LSELDRFLNG DDNDEEYLNG EGMNTTITNT TSSDYMDNAV NKKHNAVNKK RKRTRPKSKV 300 WMYFTQMHNT RDVLVYVVCH SCDRGFTSGR STNGISHLWR HHRYCANKRP STGNANDATT 360 EWETKIRPVF LNLKN*

Sequence ? help Back to Top

Protein Sequence Length: 376 aa Download sequence Send to blast

MQTRTTADPD EREDNVREHF TKFCSATDPD EVYAACRRCD KVLKAHPEKH GTSHLIGHIH  60
TCSSCTNPST DEDREMLHHL RTALDNPYEQ QKMMDEKLNC QEDLTQLNPY DLIKLTTGGT  120
PWYVTTSFNR QTREGMWVEK NEEFVAIRME QPQKMWHETS AVQMVDLSQK PVTPEYPGVR  180
RTLEFRNQDG RKTDWFMHEY QRIMLQYQQV DDNKSPALLL QGGMVIRKVF RYNKDAFLST  240
LSELDRFLNG DDNDEEYLNG EGMNTTITNT TSSDYMDNAV NKKHNAVNKK RKRTRPKSKV  300
WMYFTQMHNT RDVLVYVVCH SCDRGFTSGR STNGISHLWR HHRYCANKRP STGNANDATT  360
EWETKIRPVF LNLKN*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	288	293	KKRKRT

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.27690	1e-147	root

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.6NG334600.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
STRING	Pavir.Fb02122.1.p	0.0	(Panicum virgatum)

Link Out ? help Back to Top
Phytozome	Pavir.6NG334600.2.p