PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6NG320700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 439aa    MW: 50720.8 Da    PI: 7.9322
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6NG320700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM27.96.8e-09117176128
                  NAM  76 ratksgyWkatgkdkevlsk...kgel...........vglkktLvfykgrapkgektdWvmheyrl 128
                          r t+sgyWk++  + + +++   +  +            g+ +tL fy   +++g+ktdWv+hey+l
  Pavir.6NG320700.1.p  11 R-THSGYWKEKEDEFTAMRSnggG--EgssspssspsyHGVTRTLEFY---EHNGTKTDWVIHEYNL 71 
                          4.899****999988888775541..145677888888**********...78999*********87 PP
2NAM22.82.5e-0724730077127
                  NAM  77 atksgyWkatgk.dkevlsk..kgel.....vglkktLvfykgrapkgektdWvmheyr 127
                          +t++g+W++  + dk +  +  +  l      g+k+tL f+   + +g+k dW+m ey+
  Pavir.6NG320700.1.p 247 KTHQGRWEEIKSnDKLIAIRigQ--LpvpqyAGMKRTLEFH---HDNGTKMDWIMLEYH 300
                          5899****887725555555440..356666*********9...78999*********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100514.285188IPR003441NAC domain
SuperFamilySSF1019411.83E-81088IPR003441NAC domain
PfamPF023653.3E-61071IPR003441NAC domain
SMARTSM006142.9E-9133188IPR003656Zinc finger, BED-type
PROSITE profilePS5080811.55134194IPR003656Zinc finger, BED-type
PfamPF028922.8E-5137179IPR003656Zinc finger, BED-type
SuperFamilySSF576672.74E-5138183No hitNo description
SuperFamilySSF1019413.53E-6228302IPR003441NAC domain
PfamPF023651.7E-5231300IPR003441NAC domain
SMARTSM006147.8E-6382434IPR003656Zinc finger, BED-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MPKKPGSSSL RTHSGYWKEK EDEFTAMRSN GGGEGSSSPS SSPSYHGVTR TLEFYEHNGT  60
KTDWVIHEYN LLDNDMFEDV VFRKVFNKKH TDRVPYYSKG VDVDLEVYLD AALANPERYE  120
RRKFLTASAA PDRESSDDVW QHFTRINTKD PDVVYAACHH CDRVLRAHSK NGTSHLRRHR  180
KSKTCTCNNN PLSTTEDQEI LRELRANLDL YKQGNMEGRV DSPELNASVD PWDLSTPRYC  240
TNLLSLKTHQ GRWEEIKSND KLIAIRIGQL PVPQYAGMKR TLEFHHDNGT KMDWIMLEYH  300
QGSMVFRKVI QIFKDAVKEL ERMWNGDDDE EEHYIGEREE EVKARMSTLL RDCLLGENWW  360
SGWVGQCDQS RLGKRKRTGG PDGGSEVWLY FTKIYTTDPG RVYAVCHCCD RGYKFHAKNG  420
TSQFIRHNKS CSSKRQKV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6NG320700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025807168.10.0uncharacterized protein LOC112885746
RefseqXP_025807169.10.0uncharacterized protein LOC112885747
TrEMBLA0A2S3HFB80.0A0A2S3HFB8_9POAL; Uncharacterized protein
TrEMBLA0A2T8KLV60.0A0A2T8KLV6_9POAL; Uncharacterized protein
STRINGPavir.J39504.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15166411