PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6NG316200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 398aa    MW: 42031.7 Da    PI: 5.7433
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6NG316200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.23.5e-09210257455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +h+ +Er RR+ri +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Pavir.6NG316200.1.p 210 SHSLAERVRRERISQRMKVLQDLVPGC----NKVIGKALMLDEIINYVQSLQ 257
                          8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.69E-10204261No hitNo description
SuperFamilySSF474592.36E-16204271IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.301206256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.6E-16206269IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-6210257IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.0E-10212262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MEGRAGGGDY IASLLSSAPR LDFGVLGSVP AMLDAAAAGG DGGEDCLERF CGDPGFAERA  60
ARLSSFSGQR FAGAGAAAGL FGLPLPAPAA SNGEFAGSRE ASSVSDPASA MKDANAKKRK  120
APAAAKGKGK ESSAQAGDQK DPDAKRCKTE GAEGKKEESP VKPKSEQAGS DSSVEDGGHK  180
SAGKGKNAKP VEPPKDYVHV RARRGQATDS HSLAERVRRE RISQRMKVLQ DLVPGCNKVI  240
GKALMLDEII NYVQSLQRQV EFLSMKLATV NPLDFSNLPT LLQKDMFQAC GPSASSVFSL  300
ESSSSGFPFS DQGDVFQSFV QNGMENQCGL NPLDLALSQA TNGQYAFQDG TPSTNLQQRN  360
FWEDDLQSVF HIDNGQSQEE NGCFHGQLQA GHMKMEF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.98900.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6NG316200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025821024.10.0transcription factor bHLH78-like isoform X1
TrEMBLA0A3L6PMB30.0A0A3L6PMB3_PANMI; Transcription factor bHLH78-like
STRINGPavir.Fb01965.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91938137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.13e-51bHLH family protein