PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.6NG315100.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | SBP | ||||||||
Protein Properties | Length: 265aa MW: 28192.2 Da PI: 8.513 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 44.1 | 5.3e-14 | 2 | 30 | 48 | 76 |
SEEETTT--SS--S-STTTT-------S- CS SBP 48 rfhelsefDeekrsCrrrLakhnerrrkk 76 rfh+l+efD++krsCrrrL +hnerrr++ Pavir.6NG315100.3.p 2 RFHQLHEFDQQKRSCRRRLMGHNERRRRP 30 9**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51141 | 14.246 | 1 | 30 | IPR004333 | Transcription factor, SBP-box |
Gene3D | G3DSA:4.10.1100.10 | 5.2E-4 | 2 | 17 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 2.2E-7 | 2 | 29 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 3.14E-11 | 2 | 33 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 265 aa Download sequence Send to blast |
MRFHQLHEFD QQKRSCRRRL MGHNERRRRP PAGPLASRYG RLAASLGEPG RFRSFLLDFS 60 YPRVPSSMRD GWQAAQPGER VPGSMQWQSS LDPHHHSAIA GYGAHSYGSQ GSPSSGPPVF 120 PGPELPPGGC LAGVPADSSC ALSLLSTQPW DTTQSAGHSR AASMPATAGF DGNPVAPSVM 180 ASSYIMPSPW MGSQGHAGGR NMTPQLPPEV PLDEVHSGSS SRHGQFSGEL ELALQGSRPA 240 PAPRIDQGST STFDQASNTS DWSL* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.11396 | 0.0 | root| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young panicles. {ECO:0000269|PubMed:16861571}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.6NG315100.3.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025821402.1 | 1e-169 | squamosa promoter-binding-like protein 14 | ||||
Swissprot | Q7EXZ2 | 1e-113 | SPL14_ORYSJ; Squamosa promoter-binding-like protein 14 | ||||
TrEMBL | A0A290G8S3 | 1e-175 | A0A290G8S3_PANVG; Squamosa promoter binding-like protein 4a | ||||
STRING | Pavir.Fb01946.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42200.1 | 6e-15 | squamosa promoter binding protein-like 9 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.6NG315100.3.p |