PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6NG314400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 643aa    MW: 66062.8 Da    PI: 9.6609
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6NG314400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.22.2e-092457438
                         S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HH CS
      Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmgkgRtlk 38
                         W t+E++ll++av+++G+ +W+++a +++  R++ 
  Pavir.6NG314400.1.p 24 WGTWEELLLACAVRRHGTASWDSVAMEVQ-SRCPA 57
                         *****************************.66653 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.00632078IPR001005SANT/Myb domain
CDDcd001672.15E-42458No hitNo description
PfamPF002497.2E-92472IPR001005SANT/Myb domain
Gene3DG3DSA:1.20.920.109.1E-14283406IPR001487Bromodomain
SMARTSM002974.8E-10294408IPR001487Bromodomain
SuperFamilySSF473703.66E-14297407IPR001487Bromodomain
CDDcd043699.23E-13301403No hitNo description
PfamPF004392.5E-9311393IPR001487Bromodomain
PROSITE profilePS500149.739313389IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 643 aa     Download sequence    Send to blast
MTARSDDPGV SPGTSSAAAA GEIWGTWEEL LLACAVRRHG TASWDSVAME VQSRCPASAA  60
ARLSPTGCRL RFRLLHRRFA AGAENGDGGG ADADEDPDAT AADGWVEELR KLRVAELRRE  120
VERYDLSIGS LQSKVKRLKE ERERSFSGEA DPPAAKAEEG EEPAAGKGSL EDDAAGGEDR  180
VSGGESGRSC RESNSSDLKR PVSDTGTGTA SAAGDGGAAA KEEEAAAAGG VSVDVKREEV  240
SGESVAGSKE ADKESSDVQS SASPSRRRAR EGGGGGEGGE EAETEEASAS PSARAALPAA  300
ESEALLAFLE SVRTSKPGSV FEQRLESQDD AKYRSTIRRH VDLETVRSKL VGGGGGGGAC  360
YGSASEFYRD LLLLCANALV FFPRGSPEHA AAARMRALVS NHMAAFLRQD QPGNSGKAAA  420
PASKKAKAEA DVGSLLEKTA AIIVCRKRSS IAKAAAAASK DDKAEKAETD KEEENEAGKK  480
KAGGAKDKAP RGLRTNKTRA APARKAASNQ KTGDDDSESD GPAEGTRKPD KKGGSGAAGS  540
GAGAAKKRNA VNFLNRMKQG SAPSTERVSL LETLKLSAAA EQKKAGKGSE GKKEAPGGSG  600
SKRGTPPGRR NVGRPPKRAA APPSPPPAKR GRGGGGKRGG RK*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.215330.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6NG314400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025820863.10.0uncharacterized protein LOC112896947
TrEMBLA0A2S3I3Z60.0A0A2S3I3Z6_9POAL; Uncharacterized protein
STRINGPavir.Fb01943.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31812648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60110.15e-19DNA-binding bromodomain-containing protein