PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6NG308900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 192aa    MW: 19883.5 Da    PI: 4.7762
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6NG308900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP239.61.3e-123381456
                  AP2  4 kGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                         +GVr +k +grW+AeIr+p +   r + ++g+fg+   Aa a++aa  +++ge
  Pavir.6NG308900.1.p 33 TGVRPRK-SGRWAAEIRVPAT---REKLWIGTFGSDRLAALAYDAAVFCFYGE 81
                         69*9777.8*********954...4**********99**********999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.7E-133192IPR016177DNA-binding domain
PROSITE profilePS5103217.9523192IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-193192IPR001471AP2/ERF domain
SMARTSM003803.1E-183198IPR001471AP2/ERF domain
PfamPF008479.5E-83480IPR001471AP2/ERF domain
CDDcd000184.67E-183494No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MAALATNGSG APWSGGGGQP GVAFGRQKQS EWTGVRPRKS GRWAAEIRVP ATREKLWIGT  60
FGSDRLAALA YDAAVFCFYG EDLPKTRRFN FPVAPRPDVP EILCGHLSVA SVKAIAELHA  120
RTVDALLPPV CDAAAALAAV AATEAGPSAG ATPTTMADNS NLVVASAVDE DQFSFDPDVI  180
AGLMGLVPDE Y*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6NG308900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822464.12e-93ethylene-responsive transcription factor ERF011-like
TrEMBLA0A3L6RGE57e-97A0A3L6RGE5_PANMI; Uncharacterized protein
STRINGPavir.Fb01907.1.p1e-136(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54442555
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71520.11e-17ERF family protein