PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6NG304400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family LBD
Protein Properties Length: 189aa    MW: 20452.1 Da    PI: 8.7417
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6NG304400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260120.68.8e-38321321101
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                          +CaaCk+lrr+Ca+dCvla yfpa+qp+++a vh +FG+snv++ll+ lp +er++a+++++ eA++r++dPvyG++gvi +lqq+++ +
  Pavir.6NG304400.1.p  32 RCAACKYLRRRCAPDCVLASYFPASQPRRYADVHAVFGTSNVTRLLQGLPVQERRRAADTMATEARWRVQDPVYGCTGVIDRLQQEIRAV 121
                          6***************************************************************************************** PP

               DUF260  91 kaelallkeel 101
                          ++ela+++++l
  Pavir.6NG304400.1.p 122 QHELATTRAQL 132
                          ******99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.62231132IPR004883Lateral organ boundaries, LOB
PfamPF031951.1E-3732129IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MSSSAGGNME EEAVEHQQQQ LDYGGGSNNP RRCAACKYLR RRCAPDCVLA SYFPASQPRR  60
YADVHAVFGT SNVTRLLQGL PVQERRRAAD TMATEARWRV QDPVYGCTGV IDRLQQEIRA  120
VQHELATTRA QLAVYARAAP PAQGTQLMMM PSLSPPPPQQ PLLVPAAAVT GSAAVRGVAV  180
HDDDNGRR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-343313612115LOB family transfactor Ramosa2.1
5ly0_B1e-343313612115LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6NG304400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022683529.17e-82LOB domain-containing protein 24
TrEMBLA0A3L6RJR82e-80A0A3L6RJR8_PANMI; LOB domain-containing protein 24-like
STRINGPavir.Fb01953.1.p1e-129(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP52823562
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26660.16e-41LOB domain-containing protein 24