PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.6NG303400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | ERF | ||||||||
Protein Properties | Length: 192aa MW: 20001.6 Da PI: 4.6493 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 41.3 | 3.8e-13 | 33 | 81 | 4 | 56 |
AP2 4 kGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +GVr +k +grW+AeIr+p++ r + ++g+fg+ Aa a++aa +++ge Pavir.6NG303400.1.p 33 TGVRPRK-SGRWAAEIRVPTT---REKLWIGTFGSDRLAALAYDAAVFCFYGE 81 69*9777.8*********976...49*********99**********999886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.37E-13 | 31 | 92 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 17.965 | 31 | 92 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.7E-18 | 31 | 98 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.6E-19 | 31 | 92 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.66E-18 | 34 | 94 | No hit | No description |
Pfam | PF00847 | 4.7E-8 | 34 | 80 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence Send to blast |
MAALATNGSG APWSGGGGQP GVAFGRQKQS EWTGVRPRKS GRWAAEIRVP TTREKLWIGT 60 FGSDRLAALA YDAAVFCFYG EDLPKTRRFN FPVAPRPDVP EILCGHLSVA SVKAIAELHA 120 RTVDALLPPV CDATAALAAV AATEAGPSAD ATPTTMADNS NLVVASAVDE DQFSFDPDVI 180 AGLMGLVPDE Y* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.6NG303400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025822464.1 | 3e-93 | ethylene-responsive transcription factor ERF011-like | ||||
TrEMBL | A0A3L6RGE5 | 1e-96 | A0A3L6RGE5_PANMI; Uncharacterized protein | ||||
STRING | Pavir.Fb01907.1.p | 1e-134 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5444 | 25 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G21960.1 | 6e-18 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.6NG303400.1.p |