PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6NG301900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 303aa    MW: 32967.1 Da    PI: 8.9217
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6NG301900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.73.1e-141560146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                         +g+WT+eEde l++ v+++G+++W++I ++  + Rt+k+c++rw +
  Pavir.6NG301900.1.p 15 KGPWTAEEDEVLLRHVREHGPRDWSSIRSKGLLPRTGKSCRLRWVN 60
                         79*************************8876677**********87 PP
2Myb_DNA-binding41.43.3e-1371111345
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                          +++ eE+   +d+ +q G++ W++Ia +++ gRt++++k++w 
  Pavir.6NG301900.1.p  71 KFSSEEERVVIDLQAQIGNK-WARIATYLP-GRTDNDVKNFWS 111
                          79******************.*********.***********5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.331066IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.5E-211063IPR009057Homeodomain-like
SuperFamilySSF466892.4E-2813110IPR009057Homeodomain-like
SMARTSM007174.1E-131464IPR001005SANT/Myb domain
PfamPF002491.4E-121560IPR001005SANT/Myb domain
CDDcd001675.50E-141762No hitNo description
Gene3DG3DSA:1.10.10.601.1E-1764116IPR009057Homeodomain-like
PROSITE profilePS5129416.59667118IPR017930Myb domain
SMARTSM007173.2E-1068116IPR001005SANT/Myb domain
PfamPF002496.2E-1171111IPR001005SANT/Myb domain
CDDcd001675.51E-971110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MKPRGGGGEQ PAVRKGPWTA EEDEVLLRHV REHGPRDWSS IRSKGLLPRT GKSCRLRWVN  60
KLRPDLKTGC KFSSEEERVV IDLQAQIGNK WARIATYLPG RTDNDVKNFW STRQKRLARL  120
LRAPVPRRRP GKQSGSASSS HAHELPTQKN LCLDMIPFQG TTTPTPAHHT GESSSHDHDS  180
RAASQHRPGD APFPGAHGLP PPPVPLLTHA GAGRGSPSSA APTAPALLPP YDGDYYARDA  240
VAGVDPLVCP EPLAVVPPGT FFGLDDDYVH AGRVLHPEAS GVRFDDLPPE TFDFFELPHL  300
PP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-271111623126MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6NG301900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822469.11e-162probable transcription factor MYB58
SwissprotQ0JB895e-71MYB58_ORYSJ; Probable transcription factor MYB58
TrEMBLA0A2T7D9H51e-169A0A2T7D9H5_9POAL; Uncharacterized protein
STRINGPavir.Fb01900.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP57003357
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60460.12e-59MYB family protein
Publications ? help Back to Top
  1. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]