PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.6NG290200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 424aa MW: 44318.8 Da PI: 9.201 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 28.4 | 2.9e-09 | 251 | 298 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+ +Er RR++i +++ L++l+P + sk Ka +L + ++Y++sLq Pavir.6NG290200.1.p 251 RHSLAERLRREKISERMKLLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 298 599***********************9....556*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 7.98E-17 | 244 | 314 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.37E-11 | 245 | 302 | No hit | No description |
PROSITE profile | PS50888 | 15.478 | 247 | 297 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.2E-16 | 250 | 313 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.5E-6 | 251 | 298 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.2E-11 | 253 | 303 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 424 aa Download sequence Send to blast |
MLLGENTAMP NRAKQAKAEA KTRVKGSLGR SILKSSIKNT HLISLSLSLS VPTMDSFAWA 60 AVSQTPGLAA AGAVSDGRGG GLFPPMAGFH LPPPAGLGHF SLDSGLVERA GCSPCFGAAN 120 GTATTASASN ITLEGASGHR SKVAGGSSSV SGVHDEAGTG DCSSGGPEPD SKNMKRSNED 180 VLGTDQAKAS NASTDSANGS SRSKGVKGEE NGLAATTGVA GKRKRNGSKA PDEEGEGYIH 240 VRARKGQATN RHSLAERLRR EKISERMKLL QDLVPGCSKV TGKAVMLDEI INYVQSLQRQ 300 VEFLSMKLAA VNPQLGLNIE GILSKDLIRF PGAPPSAPIG FSLSQSGMVQ EGVHGLASSN 360 GFRTVMQEQL NERDSFREHV SQSLEQMPRA MDGWFHNAGQ PAYRAVINPE HLSISPDQDG 420 FHL* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.7421 | 0.0 | callus| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.6NG290200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025821587.1 | 0.0 | transcription factor bHLH49-like | ||||
TrEMBL | A0A3L6PPS3 | 0.0 | A0A3L6PPS3_PANMI; Transcription factor bHLH49-like isoform X2 | ||||
STRING | Pavir.Fb01828.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2909 | 37 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68920.3 | 1e-51 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.6NG290200.1.p |