PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6NG285900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ZF-HD
Protein Properties Length: 293aa    MW: 30109.5 Da    PI: 6.9543
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6NG285900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer102.52.8e-3269122458
          ZF-HD_dimer   4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 
                          +rY+eClkNhA+ +GghavDGCgEfm++ geeg+++al+CaACgCHRnFHR+e++
  Pavir.6NG285900.1.p  69 ARYRECLKNHAVGIGGHAVDGCGEFMAA-GEEGSIDALRCAACGCHRNFHRKESD 122
                          79*************************9.999********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047704.9E-2969121IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015668.2E-3070120IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257747.0E-2570123IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.96371120IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466897.72E-21219290IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.7E-32220291IPR009057Homeodomain-like
TIGRFAMsTIGR015655.1E-27229285IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MDFDEHDDGD GDEEMTPMPV TSSYDAPMQP GLGLAGGGGT PKPGDSAGGS FRTPGGGGGG  60
GGGGGGGGAR YRECLKNHAV GIGGHAVDGC GEFMAAGEEG SIDALRCAAC GCHRNFHRKE  120
SDSPTGGVSP ADPAAALSPA AITAYGAAAA HHHPFSPYYR TPAGYLLHQH QQLAAAAAGH  180
MQRPLALPST SHSGRDEGDD MSGLIGPLMV APMVGMSLGS GGGASGSGKK RFRTKFTQEQ  240
KDRMLGFAEQ LGWRIQKHDE AAVQQFCEEV GVKRHVLKVW MHNNKHTLGK KP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A3e-282302871875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6NG285900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9632771e-140EU963277.1 Zea mays clone 260287 ZF-HD protein dimerisation region containing protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001149424.21e-152uncharacterized protein LOC100283050
SwissprotA2YWA61e-124ZHD2_ORYSI; Zinc-finger homeodomain protein 2
SwissprotQ6ZB901e-124ZHD2_ORYSJ; Zinc-finger homeodomain protein 2
TrEMBLA0A1D6KLI51e-151A0A1D6KLI5_MAIZE; ZF-HD protein dimerization region containing protein
TrEMBLA0A317YC701e-151A0A317YC70_MAIZE; Zinc-finger homeodomain protein 2
STRINGGRMZM2G346920_P011e-152(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39503269
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02540.18e-53homeobox protein 21
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]