PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.6NG283900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 257aa MW: 26593.8 Da PI: 10.4994 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 44 | 3.8e-14 | 44 | 90 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+h+e+Er+RR+riN+ +++Lr+l+P+a +++Ka+ L ++v+++++L Pavir.6NG283900.1.p 44 RSHSEAERKRRQRINEHLATLRTLVPSA-----SRMDKAALLGEVVRHVREL 90 68*************************9.....7***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.993 | 41 | 90 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.93E-14 | 44 | 98 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.0E-15 | 44 | 93 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.34E-12 | 44 | 91 | No hit | No description |
Pfam | PF00010 | 9.5E-12 | 44 | 90 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.3E-13 | 47 | 96 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
GSAQLNSWTG WRVVRGGGED GGDGRRSGGG APGAGAGGAE GAGRSHSEAE RKRRQRINEH 60 LATLRTLVPS ASRMDKAALL GEVVRHVREL RGKASEAAEG VGAGVIPGES DEVGVEEDDG 120 RWRPGGRRCG AGWVLGTTGA ADGRLPPRRV RAWVCCADRP GLMADLGRAV RSVGNARPVR 180 AEIATVGGRT RGVVELDVCC DDDGDVAAAA TDKSRAVALS TLRAALRAVL LNRGDHLAAA 240 EGYKRPRFSA QIAKVQ* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 49 | 54 | ERKRRQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.6NG283900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025822447.1 | 1e-118 | transcription factor AIG1-like | ||||
TrEMBL | A0A2T8IHC4 | 1e-117 | A0A2T8IHC4_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J25149.1.p | 1e-163 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4114 | 35 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G25710.1 | 2e-19 | basic helix-loop-helix 32 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.6NG283900.1.p |