PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6NG283900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 257aa    MW: 26593.8 Da    PI: 10.4994
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6NG283900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH443.8e-144490354
                         HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                         r+h+e+Er+RR+riN+ +++Lr+l+P+a      +++Ka+ L ++v+++++L
  Pavir.6NG283900.1.p 44 RSHSEAERKRRQRINEHLATLRTLVPSA-----SRMDKAALLGEVVRHVREL 90
                         68*************************9.....7***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.9934190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.93E-144498IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.0E-154493IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.34E-124491No hitNo description
PfamPF000109.5E-124490IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.3E-134796IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
GSAQLNSWTG WRVVRGGGED GGDGRRSGGG APGAGAGGAE GAGRSHSEAE RKRRQRINEH  60
LATLRTLVPS ASRMDKAALL GEVVRHVREL RGKASEAAEG VGAGVIPGES DEVGVEEDDG  120
RWRPGGRRCG AGWVLGTTGA ADGRLPPRRV RAWVCCADRP GLMADLGRAV RSVGNARPVR  180
AEIATVGGRT RGVVELDVCC DDDGDVAAAA TDKSRAVALS TLRAALRAVL LNRGDHLAAA  240
EGYKRPRFSA QIAKVQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14954ERKRRQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6NG283900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822447.11e-118transcription factor AIG1-like
TrEMBLA0A2T8IHC41e-117A0A2T8IHC4_9POAL; Uncharacterized protein
STRINGPavir.J25149.1.p1e-163(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP41143569
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25710.12e-19basic helix-loop-helix 32