PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6NG278200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 390aa    MW: 40488.6 Da    PI: 4.7189
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6NG278200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.42.9e-14139189154
                          CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i   A++Y+k++
  Pavir.6NG278200.1.p 139 QRMTHIAVERNRRKQMNEYLAALRSLMPPS---YVQRGDQASIIGGAINYVKEM 189
                          79****************************...9*****************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.82E-14137194No hitNo description
SuperFamilySSF474592.22E-17138207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.936138189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-14139206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-11139189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-11144195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MALEAVVFSE GLFGSWAMAA APGGGGWSWG HGENEHGGAV EGVMDLEGGA VAAYWEVGAS  60
SSVMMQGADQ QEPDASLSAA ALPENGGGGG NNAAAGGGAV FSQEVAVAAA AAPMSPPPAG  120
RRKRRRTRSV KNREEVESQR MTHIAVERNR RKQMNEYLAA LRSLMPPSYV QRGDQASIIG  180
GAINYVKEME QLLQSLEARK HARRQDLSSP GAAGDADAAA GPFAGFFTFP QYSMSAGAGG  240
APFPATANTP PEDGEGRPKN ADADGNHGDG DDAAASGSRP SSVADVEVTM VESHASLKLL  300
SRRRPRQLLR LVAGLQGHRL TVLHLNATSD DARRMALYSL SLKVEDDCAL LSVDDIAAAV  360
HGIVEAVDRE EGGGAELHGS HADDDDEEE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1121125RKRRR
2121126RKRRRT
3139150RMTHIAVERNRR
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6NG278200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1076264e-92AK107626.1 Oryza sativa Japonica Group cDNA clone:002-131-D10, full insert sequence.
GenBankHQ8588614e-92HQ858861.1 Oryza sativa Japonica Group isolate UT1670 bHLH transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004973718.11e-140transcription factor bHLH94
SwissprotQ9C7T44e-70BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A3L6RF591e-171A0A3L6RF59_PANMI; Transcription factor bHLH94-like
STRINGPavir.Fb01787.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74138156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.13e-50bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]